Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 773 79.9 4112934 92.2% 3792125 104.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,024,792 G→A T11M (ACG→ATG)  dsrB ← uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,024,7920GA100.0% 279.7 / NA 86T11M (ACG→ATG) dsrBuncharacterized protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (45/41);  total (45/41)

TCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCT  >  NC_000913/2024663‑2024915
                                                                                                                                  |                                                                                                                           
tCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTg                                                                                                                    >  2:294484/1‑139 (MQ=255)
tCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTg                                                                                                                    >  2:135774/1‑139 (MQ=255)
 ccTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGt                                                                                                                   <  1:214876/139‑1 (MQ=255)
            gCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCAt                                                                                                        >  2:1920510/1‑139 (MQ=255)
                cATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCAc                                                                                                    >  1:920591/1‑139 (MQ=255)
                       gAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATc                                                                                             >  1:96915/1‑139 (MQ=255)
                          ccAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGa                                                                                                                       <  2:1699884/110‑1 (MQ=255)
                          ccAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGa                                                                                                                       >  1:1699884/1‑110 (MQ=255)
                          ccAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTAccc                                                                                                              >  1:921377/1‑119 (MQ=255)
                          ccAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTAccc                                                                                                              <  2:921377/119‑1 (MQ=255)
                          ccAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCAtt                                                                                                       <  2:659120/126‑1 (MQ=255)
                          ccAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCAtt                                                                                                       >  1:659120/1‑126 (MQ=255)
                          ccAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGtt                                                                                          <  2:1991888/139‑1 (MQ=255)
                          ccAGATGCCGAGCGGGTAGTCTTCCAGCAAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGAt                                                                                                           >  1:1521450/1‑122 (MQ=255)
                          ccAGATGCCGAGCGGGTAGTCTTCCAGCAAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCACAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGAt                                                                                                           <  2:1521450/122‑1 (MQ=255)
                            aGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGa                                                                                                                       >  2:913453/1‑109 (MQ=255)
                            aGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGa                                                                                                                       <  1:913453/109‑1 (MQ=255)
                                  cGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCAtttt                                                                                                                         >  2:466006/1‑100 (MQ=255)
                                  cGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCAtttt                                                                                                                         <  1:466006/100‑1 (MQ=255)
                                    aGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTtcc                                                                                      >  1:1618523/1‑133 (MQ=255)
                                    aGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTtcc                                                                                      <  2:1618523/133‑1 (MQ=255)
                                    aGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCtgt                                                                                >  1:1617731/1‑139 (MQ=255)
                                        ggTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCt                                                                            <  1:294484/139‑1 (MQ=255)
                                         gTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCtt                                                                           <  2:96915/139‑1 (MQ=255)
                                                       aaaCCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGt                                                                                                                   >  1:38915/1‑85 (MQ=255)
                                                       aaaCCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGt                                                                                                                   <  2:38915/85‑1 (MQ=255)
                                                       aaaCCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGa                                                             >  2:22037/1‑139 (MQ=255)
                                                        aaCCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGaa                                                            <  2:920591/139‑1 (MQ=255)
                                                              gTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGa                                                                                                                       >  1:1293099/1‑74 (MQ=255)
                                                              gTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGa                                                                                                                       <  2:1293099/74‑1 (MQ=255)
                                                               tACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTc                                                     >  1:274967/1‑139 (MQ=255)
                                                                 cA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGc                                                                      <  1:529165/120‑1 (MQ=255)
                                                                 cA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGc                                                                      >  2:529165/1‑120 (MQ=255)
                                                                  a‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCt                                                                            >  2:224942/1‑113 (MQ=255)
                                                                  a‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCt                                                                            <  1:224942/113‑1 (MQ=255)
                                                                    ttGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGc                                                                      <  2:945220/118‑1 (MQ=255)
                                                                    ttGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGc                                                                      >  1:945220/1‑118 (MQ=255)
                                                                       tgCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCAttt                                                                                                                          <  1:1124152/63‑1 (MQ=255)
                                                                       tgCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCAttt                                                                                                                          >  2:1124152/1‑63 (MQ=255)
                                                                          cTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGaa                                                            <  2:2004629/122‑1 (MQ=255)
                                                                          cTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGaa                                                            >  1:2004629/1‑122 (MQ=255)
                                                                              aCTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCg                                                                                                             <  1:1200715/69‑1 (MQ=255)
                                                                              aCTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCg                                                                                                             >  2:1200715/1‑69 (MQ=255)
                                                                                       ctcAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTAcc                                                                                                               <  2:774581/58‑1 (MQ=255)
                                                                                       ctcAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTAcc                                                                                                               >  1:774581/1‑58 (MQ=255)
                                                                                       ctcAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCa                                                                                                         >  1:873590/1‑64 (MQ=255)
                                                                                       ctcAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCa                                                                                                         <  2:873590/64‑1 (MQ=255)
                                                                                       ctcAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGtt                                                                                          >  2:1371883/1‑79 (MQ=255)
                                                                                       ctcAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGtt                                                                                          <  1:1371883/79‑1 (MQ=255)
                                                                                       ctcAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGc                                          >  1:391969/1‑127 (MQ=255)
                                                                                       ctcAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGc                                          <  2:391969/127‑1 (MQ=255)
                                                                                            cTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGcgcgcgcg                         >  2:260810/1‑139 (MQ=255)
                                                                                               ccAGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGt                      >  2:655285/1‑139 (MQ=255)
                                                                                                 aGTACCACGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGc                    >  2:741453/1‑139 (MQ=255)
                                                                                                        cGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGAtttt             >  2:1608116/1‑139 (MQ=255)
                                                                                                        cGCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGAtttt             >  2:743506/1‑139 (MQ=255)
                                                                                                         gCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCa                                                                                               <  1:1448712/56‑1 (MQ=255)
                                                                                                         gCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCa                                                                                               >  2:1448712/1‑56 (MQ=255)
                                                                                                         gCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGc                                                                      >  2:818849/1‑81 (MQ=255)
                                                                                                         gCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGc                                                                      <  1:818849/81‑1 (MQ=255)
                                                                                                         gCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCa                                                                    <  1:235376/83‑1 (MQ=255)
                                                                                                         gCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCa                                                                    >  2:235376/1‑83 (MQ=255)
                                                                                                         gCCAGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTtc            >  2:56016/1‑139 (MQ=255)
                                                                                                            aGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCg         <  1:260810/139‑1 (MQ=255)
                                                                                                            aGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCg         <  1:743506/139‑1 (MQ=255)
                                                                                                            aGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCg         <  2:274967/139‑1 (MQ=255)
                                                                                                            aGGACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCg         <  1:135774/139‑1 (MQ=255)
                                                                                                             ggACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCAc                                                                                                    <  1:1559198/47‑1 (MQ=255)
                                                                                                             ggACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCAc                                                                                                    >  2:1559198/1‑47 (MQ=255)
                                                                                                             ggACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACaa                                                         <  1:1902704/90‑1 (MQ=255)
                                                                                                             ggACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACaa                                                         >  2:1902704/1‑90 (MQ=255)
                                                                                                             ggACGACGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGa        <  1:1920510/139‑1 (MQ=255)
                                                                                                              gacgacGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGgcg                               <  2:33142/115‑1 (MQ=255)
                                                                                                              gacgacGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGgcg                               >  1:1522567/1‑115 (MQ=255)
                                                                                                              gacgacGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGgcg                               <  2:1522567/115‑1 (MQ=255)
                                                                                                              gacgacGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGgcg                               >  1:33142/1‑115 (MQ=255)
                                                                                                              gacgacGCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGAc       >  2:1107728/1‑139 (MQ=255)
                                                                                                               acgacgCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTGTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACg      <  1:1107728/139‑1 (MQ=255)
                                                                                                                 gacgCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGt    <  1:22037/139‑1 (MQ=255)
                                                                                                                 gacgCGGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGt    <  1:1512040/139‑1 (MQ=255)
                                                                                                                   cgcgGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCtt                                                                           >  2:359936/1‑66 (MQ=255)
                                                                                                                   cgcgGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCtt                                                                           <  1:359936/66‑1 (MQ=255)
                                                                                                                   cgcgGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGc                                                                      >  2:438028/1‑71 (MQ=255)
                                                                                                                   cgcgGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGc                                                                      <  1:438028/71‑1 (MQ=255)
                                                                                                                   cgcgGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCt  >  1:1013239/1‑139 (MQ=255)
                                                                                                                   cgcgGACCGCCATCCATTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCt  >  1:1671062/1‑139 (MQ=255)
                                                                                                                                  |                                                                                                                           
TCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACA‑TTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGGACGACGCGGACCGCCATCCGTTTTGACTGTTACCCGATCATTCACCTTCATCGTTTTCCTCCTGTGGCTTTGTGCCAGTGTAGAACAATTTCGTTTTTCTGGCAGCGCCAGGCGCGCGCGAGTGCTGATTTTCTCGACGGTCT  >  NC_000913/2024663‑2024915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A