Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,253,204 |
C→T |
G917S (GGC→AGC) |
ycgV ← |
putative autotransporter adhesin YcgV |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,253,204 | 0 | C | T | 100.0%
| 66.7
/ NA
| 20 | G917S (GGC→AGC) | ycgV | putative autotransporter adhesin YcgV |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (10/10); total (10/10) |
CAAAGAGGTTACCCTGCGTGTAATCCGCTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCCGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTCCCGGGAGTTGTTCAACAGATATTCGGTATCCCCTGA > NC_000913/1253126‑1253276
|
cAAAGAGGTTACCCTGCGTGTAATCCGCTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCTGt > 1:225038/1‑81 (MQ=255)
ggTTACCCTGCGTGTAATCCGCTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCTGTTATTcc < 2:225005/81‑1 (MQ=255)
ttACCCTGCGTGTAATCCGCTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCTGTTATTCCAg > 2:225039/1‑81 (MQ=255)
aCCCTGCGTGTAATCCGCTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCTGTTATTCCAGc > 2:225037/1‑80 (MQ=255)
gCGTGTAATCCGCTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCTGTTATTCCAGCCATTAc > 2:225032/1‑81 (MQ=255)
tgtAATCCGCTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCTGTTATTCCAGCCATTACCtt < 1:225006/81‑1 (MQ=255)
ccGCTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCTGTTATTCCAGCCATTACCTTTGAAAc > 2:225045/1‑81 (MQ=255)
cTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCTGTTATTCCAGCCATTACCTTTGAAACTGt < 2:225007/81‑1 (MQ=255)
cGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCTGTTATTCCAGCCATTACCTTTGAAACTGTa < 1:225008/79‑1 (MQ=255)
tAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCTGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTcc < 1:225009/81‑1 (MQ=255)
aTGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCTGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTCCCggg < 1:225010/81‑1 (MQ=255)
tgtttgttATACTGTGCACTGACTCCCACGCTGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTCCCGGGAgttgtt > 2:225041/1‑80 (MQ=255)
tgtgCACTGACTCCCACGCTGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTCCCGGGAGTTGTTCAACAGATATTCg > 2:225048/1‑81 (MQ=255)
tgCACTGACTCCCACGCTGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTCCCGGGAGTTGTTCAACAGATATTCgg < 1:225012/80‑1 (MQ=255)
tgCACTGACTCCCACGCTGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTCCCGGGAGTTGTTCAACAGATATTCGGt < 1:225011/81‑1 (MQ=255)
aCTGACTCCCACGCTGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTCCCGGGAGTTGTTCAACAGATATTCGGTATc > 1:225046/1‑81 (MQ=255)
aCTCCCACGCTGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTCCCGGGAGTTGTTCAACAGATATTCGGTATccc < 2:225013/79‑1 (MQ=255)
aCTCCCACGCTGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTCCCGGGAGTTGTTCAACAGATATTCGGTATCCCCt > 2:225043/1‑81 (MQ=255)
cTCCCACGCTGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTCCCGGGAGTTGTTCAACAGATATTCGGTATCCCCTg < 1:225014/81‑1 (MQ=255)
cccACGCTGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTCCCGGGAGTTGTTCAACAGATATTCGGTATCCCCTGa > 2:225040/1‑80 (MQ=255)
|
CAAAGAGGTTACCCTGCGTGTAATCCGCTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCCGTTATTCCAGCCATTACCTTTGAAACTGTACTTCTCCCGGGAGTTGTTCAACAGATATTCGGTATCCCCTGA > NC_000913/1253126‑1253276
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
