Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,986,136 |
T→C |
intergenic (‑8/‑789) |
araF ← / → ftnB |
arabinose ABC transporter periplasmic binding protein/putative ferritin‑like protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,986,136 | 0 | T | C | 100.0%
| 77.1
/ NA
| 22 | intergenic (‑8/‑789) | araF/ftnB | arabinose ABC transporter periplasmic binding protein/putative ferritin‑like protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (6/16); total (6/16) |
CGCCATAGCGGATTGTGACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCTCCAGCTTTAGTGTCGTTTTGTGTAGGGCAAAAACGAATGACATTCGTTAAATTAATCGGAAAACAAAGCATTACC > NC_000913/1986060‑1986211
|
cGCCATAGCGGATTGTGACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCa < 1:339057/80‑1 (MQ=255)
cGCCATAGCGGATTGTGACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCa < 1:339056/80‑1 (MQ=255)
gCCATAGCGGATTGTGACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGc < 1:339058/81‑1 (MQ=255)
gCCATAGCGGATTGTGACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGc > 2:339087/1‑81 (MQ=255)
gCCAAAGCGGATTGTGACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGc > 1:339083/1‑81 (MQ=255)
cATAGCGGATTGTGACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGCtt < 1:339059/81‑1 (MQ=255)
aTAGCGGATTGTGACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGCttt < 2:339060/81‑1 (MQ=255)
aGCGGATTGTGACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGCTTTAg > 2:339090/1‑81 (MQ=255)
tgACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGCTTTAGTGTCGtttt < 1:339062/81‑1 (MQ=255)
tgACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGCTTTAGTGTCGttt < 2:339061/80‑1 (MQ=255)
gACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGCTTTAGTGTCGTTTtg > 1:339085/1‑81 (MQ=255)
aCATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGCTTTAGTGTCGTTTtgt < 2:339063/81‑1 (MQ=255)
tAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGCTTTAGTGTCGTTTTGTGTa < 1:339064/81‑1 (MQ=255)
cGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGCTTTAGTGTCGTTTTGTGTAggg < 1:339065/81‑1 (MQ=255)
cAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGCTTTAGTGTCGTTTTGTGTAGGGCAAAAAc < 1:339066/81‑1 (MQ=255)
cAGGGCTTTAGTAAATTTGTGCATGGTTCTCCCCAGCTTTAGTGTCGTTTTGTGTAGGGCAAAAACGAATGACATTCGtt > 1:339091/1‑80 (MQ=255)
aGTAAATTTGTGCATGGTTCTCCCCAGCTTTAGTGTCGTTTTGTGTAGGGCAAAAACGAATGACATTCGTTAAATTAATc < 2:339067/80‑1 (MQ=255)
tAAATTTGTGCATGGTTCTCCCCAGCTTTAGTGTCGTTTTGTGTAGGGCAAAAACGAATGACATTCGTTAAATTAATCGGa < 1:339068/81‑1 (MQ=255)
aTTTGTGCATGGTTCTCCCCAGCTTTAGTGTCGTTTTGTGTAGGGCAAAAACGAATGACATTCGTTAAATTAATCGGaaaa < 2:339069/81‑1 (MQ=255)
tttGTGCATGGTTCTCCCCAGCTTTAGTGTCGTTTTGTGTAGGGCAAAAACGAATGACATTCGTTAAATTAATCGGAAAAc < 1:339070/81‑1 (MQ=255)
aTGGTTCTCCCCAGCTTTAGTGTCGTTTTGTGTAGGGCAAAAACGAATGACATTCGTTAAATTAATCGGAAAACAAAGCAt > 1:339088/1‑81 (MQ=255)
ttCTCCCCAGCTTTAGTGTCGTTTTGTGTAGGGCAAAAACGAATGACATTCGTTAAATTAATCGGAAAACAAAGCATTAcc < 1:339071/81‑1 (MQ=255)
|
CGCCATAGCGGATTGTGACATAACGGCTGCCAGACCAATGGCTGCCAGGGCTTTAGTAAATTTGTGCATGGTTCTCTCCAGCTTTAGTGTCGTTTTGTGTAGGGCAAAAACGAATGACATTCGTTAAATTAATCGGAAAACAAAGCATTACC > NC_000913/1986060‑1986211
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
