Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,248,232 |
T→A |
N101Y (AAC→TAC) |
lysP ← |
lysine:H(+) symporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,248,232 | 0 | T | A | 100.0%
| 104.5
/ NA
| 30 | N101Y (AAC→TAC) | lysP | lysine:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (11/19); total (11/19) |
CACCAGCTCATGACCAGCTGAGCTGCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTTCCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGC > NC_000913/2248162‑2248305
|
caccaGCTCATGACCAGCTGAGCTGCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTAccagcccagc < 2:382378/81‑1 (MQ=255)
caGCTCATGACCAGCTGAGCTGCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAgcgc > 2:382412/1‑80 (MQ=255)
caGCTCATGACCAGCTGAGCTGCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGcgcg < 2:382379/81‑1 (MQ=255)
aGCTCATGACCAGCTGAGCTGCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGcgcg > 2:382411/1‑80 (MQ=255)
gCTCATGACCAGCTGAGCTGCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGaa < 2:382380/81‑1 (MQ=255)
aTGACCAGCTGAGCTGCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGcc > 1:382425/1‑80 (MQ=255)
aTGACCAGCTGAGCTGCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCa < 1:382382/81‑1 (MQ=255)
aTGACCAGCTGAGCTGCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCa < 1:382381/81‑1 (MQ=255)
gctgagctgCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCctt < 1:382383/81‑1 (MQ=255)
ctgagctgCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCcttc < 1:382384/81‑1 (MQ=255)
agctgCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCcttctt > 2:382418/1‑80 (MQ=255)
agctgCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCcttct < 2:382388/79‑1 (MQ=255)
agctgCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCttcttc < 1:382386/81‑1 (MQ=255)
agctgCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCttcttc < 1:382385/81‑1 (MQ=255)
agctgCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCttcttc < 2:382387/81‑1 (MQ=255)
ctgCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCaa > 2:382428/1‑81 (MQ=255)
cAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACa > 2:382420/1‑80 (MQ=255)
cAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACAt < 1:382389/81‑1 (MQ=255)
ggCGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGt > 2:382433/1‑80 (MQ=255)
cGATAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAg > 1:382431/1‑81 (MQ=255)
tAGTCACCGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTgg < 2:382390/81‑1 (MQ=255)
cGCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGa < 2:382391/81‑1 (MQ=255)
gCCCAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGaa > 2:382421/1‑81 (MQ=255)
cAGTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCg < 1:382392/81‑1 (MQ=255)
gTTGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGa < 1:382393/81‑1 (MQ=255)
tGTACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGaaa > 1:382426/1‑81 (MQ=255)
tACCAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAAcc < 1:382394/81‑1 (MQ=255)
ccAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCg < 1:382395/80‑1 (MQ=255)
cAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCgg > 2:382427/1‑80 (MQ=255)
cAGTAGTACCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGc < 1:382396/81‑1 (MQ=255)
|
CACCAGCTCATGACCAGCTGAGCTGCAACCAGGTCAACGGCGATAGTCACCGCCCAGTTGTACCAGTAGTTCCAGCCCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGC > NC_000913/2248162‑2248305
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
