Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,619,762 |
A→G |
G133G (GGT→GGC) |
uraA ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,619,762 | 0 | A | G | 100.0%
| 94.5
/ NA
| 27 | G133G (GGT→GGC) | uraA | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (10/17); total (10/17) |
GATGGTTTTGGAGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTC > NC_000913/2619684‑2619837
|
gatgGTTTTGGAGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGcc > 2:448417/1‑81 (MQ=255)
gTTTTGGATTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATg < 2:448369/81‑1 (MQ=255)
tGGAGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACgg > 2:448408/1‑81 (MQ=255)
tGGAGTCGGGCGTTTGCCCTTCAGCGGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACg < 2:448371/80‑1 (MQ=255)
tGGAGTCGGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACg < 2:448370/80‑1 (MQ=255)
aGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCaa > 2:448411/1‑81 (MQ=255)
ggCGTTTCCCCTTCACCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGAtt < 2:448372/81‑1 (MQ=255)
gCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTg > 1:448413/1‑81 (MQ=255)
cccTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCAt > 2:448416/1‑81 (MQ=255)
aGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCg > 2:448424/1‑80 (MQ=255)
aGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCg < 1:448373/80‑1 (MQ=255)
gaaaaCCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGaa < 2:448374/79‑1 (MQ=255)
aaaCCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAAc < 2:448375/81‑1 (MQ=255)
cccGCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGc < 1:448376/81‑1 (MQ=255)
gCCATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACg > 2:448415/1‑81 (MQ=255)
ccATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGt < 1:448377/81‑1 (MQ=255)
ccATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGt > 2:448423/1‑81 (MQ=255)
cATACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTc < 1:448378/81‑1 (MQ=255)
aTACCGGCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTc > 1:448425/1‑80 (MQ=255)
ggCAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTccagcca < 1:448379/81‑1 (MQ=255)
cAGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCcagccagc > 1:448420/1‑81 (MQ=255)
aGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCagccagcc < 1:448381/81‑1 (MQ=255)
aGCTACGCCCGCCAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCagccagcc < 1:448380/81‑1 (MQ=255)
cccgccAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTcccc < 1:448382/81‑1 (MQ=255)
ccgccAGCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCg < 2:448383/81‑1 (MQ=255)
gCTCCAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTttct < 1:448384/81‑1 (MQ=255)
cAGGCCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTttcttc < 2:448385/79‑1 (MQ=255)
|
GATGGTTTTGGAGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTC > NC_000913/2619684‑2619837
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
