Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,975,412 |
G→A |
R201R (CGC→CGT) |
aas ← |
acyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,975,412 | 0 | G | A | 100.0%
| 127.8
/ NA
| 36 | R201R (CGC→CGT) | aas | acyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (23/13); total (23/13) |
GTCTTCGACACATTTCTTCCCGGCTCCGAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGGCGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCGACGGTCACGGGCACGCG > NC_000913/2975337‑2975488
|
gTCTTCGACACATTTCTTCCCGGCTCCGAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCAc > 1:515499/1‑81 (MQ=255)
acacATTTCTTCCCGGCTCCGAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCAtt > 1:515492/1‑81 (MQ=255)
acacATTTCTTCCCGGCTCCGAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCAtt > 2:515502/1‑81 (MQ=255)
caTTTCTTCCCGGCTCCGAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTcgc > 2:515505/1‑81 (MQ=255)
cttcCCGGCTCCGAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTc > 2:515490/1‑81 (MQ=255)
cccGGCTCCGAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCcat > 1:515488/1‑81 (MQ=255)
ccGGCTCCGAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCcatc < 2:515452/81‑1 (MQ=255)
ccGGCTCCGAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCcatc < 1:515453/81‑1 (MQ=255)
cGAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTAttt < 2:515454/81‑1 (MQ=255)
gAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTAttt > 2:515516/1‑80 (MQ=255)
gAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTAttt > 1:515520/1‑80 (MQ=255)
gAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTg < 2:515455/81‑1 (MQ=255)
ggTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATg > 2:515501/1‑79 (MQ=255)
ggTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATg > 1:515503/1‑79 (MQ=255)
ggTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATg > 1:515504/1‑79 (MQ=255)
gTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATgcag > 2:515500/1‑81 (MQ=255)
cATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCAt > 2:515494/1‑81 (MQ=255)
cATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCAt < 1:515456/81‑1 (MQ=255)
cATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCAt < 1:515457/81‑1 (MQ=255)
gCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCg > 1:515518/1‑81 (MQ=255)
aCTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGcc < 1:515458/81‑1 (MQ=255)
aCTCAGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGc > 2:515537/1‑80 (MQ=255)
aGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGc > 2:515506/1‑80 (MQ=255)
aGTAAAGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGc > 2:515507/1‑80 (MQ=255)
aaaGATTCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGAtt > 1:515525/1‑81 (MQ=255)
ttCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCg < 1:515459/81‑1 (MQ=255)
tCGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCGa > 2:515522/1‑81 (MQ=255)
cGTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCGAc > 1:515513/1‑81 (MQ=255)
gTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCGAc < 1:515460/80‑1 (MQ=255)
gTACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCGACg < 1:515461/81‑1 (MQ=255)
tACAGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCGACgg > 2:515497/1‑81 (MQ=255)
aGCGTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCGACGGTCa < 1:515462/81‑1 (MQ=255)
gTTTCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCGACGGTCACgg > 2:515498/1‑81 (MQ=255)
tttCACGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCGACGGTCACggg > 2:515511/1‑81 (MQ=255)
aCGCGGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCGACGGTCACGGGCAcg < 1:515463/81‑1 (MQ=255)
gcgGACGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCGACGGTCACGGGCAcgcg < 2:515464/81‑1 (MQ=255)
|
GTCTTCGACACATTTCTTCCCGGCTCCGAAGCGGTACATTGCACTCAGTAAAGATTCGTACAGCGTTTCACGCGGGCGCACCGCCATTCGCGCTTCCATCATTATTTGATGCAGCATTTCGCCAGCGATTTTGCGACGGTCACGGGCACGCG > NC_000913/2975337‑2975488
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
