Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,002,788 |
C→T |
R59W (CGG→TGG) |
xdhB → |
putative xanthine dehydrogenase FAD‑binding subunit XdhB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,002,788 | 0 | C | T | 100.0%
| 99.8
/ NA
| 29 | R59W (CGG→TGG) | xdhB | putative xanthine dehydrogenase FAD‑binding subunit XdhB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (18/11); total (18/11) |
GTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAATAGAAGATCCT > NC_000913/3002716‑3002865
|
gTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAAt > 2:519393/1‑80 (MQ=255)
tACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTa > 1:519394/1‑81 (MQ=255)
cTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTAc < 1:519351/80‑1 (MQ=255)
cTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCgg > 1:519385/1‑79 (MQ=255)
caccaTCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGAt > 1:519392/1‑81 (MQ=255)
acaATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGc < 2:519352/81‑1 (MQ=255)
aaTGACCGTTATCGCCTTATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTa > 1:519389/1‑81 (MQ=255)
aTGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTAc < 2:519353/81‑1 (MQ=255)
aCCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGt < 2:519354/80‑1 (MQ=255)
aCCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTa > 2:519390/1‑81 (MQ=255)
aCCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTa > 1:519388/1‑81 (MQ=255)
cGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATc < 1:519355/81‑1 (MQ=255)
tATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGc > 1:519386/1‑81 (MQ=255)
gCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTg > 1:519381/1‑81 (MQ=255)
gCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTg > 1:519405/1‑81 (MQ=255)
gCCATATTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTg > 2:519391/1‑81 (MQ=255)
atatTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGAGGAAGATGGCTCGCTACGTATCGGCTCTGCaa < 1:519356/81‑1 (MQ=255)
atTGTTGATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAAc > 2:519400/1‑80 (MQ=255)
gttgATATTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGAc < 2:519357/80‑1 (MQ=255)
atatTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACAttt < 1:519358/80‑1 (MQ=255)
atatTCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACAttt < 2:519359/80‑1 (MQ=255)
ttCATAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTAcc > 1:519406/1‑80 (MQ=255)
tAATCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGc > 2:519397/1‑80 (MQ=255)
aTCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTaa > 1:519402/1‑81 (MQ=255)
aTCTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTa < 2:519360/80‑1 (MQ=255)
cTGGCGGAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTaa > 2:519396/1‑79 (MQ=255)
ggAGCTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAATag > 2:519395/1‑77 (MQ=255)
cTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAATAGAAGATcc > 2:519401/1‑80 (MQ=255)
cTGTGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAATAGAAGATCCt < 1:519361/81‑1 (MQ=255)
|
GTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCGGGGAATTACGCTGGCGGAAGATGGCTCGCTACGTATCGGCTCTGCAACGACATTTACCCAGCTAATAGAAGATCCT > NC_000913/3002716‑3002865
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
