Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,082,793 |
G→A |
intergenic (+122/+84) |
loiP → / ← speB |
metalloprotease LoiP/agmatinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,082,793 | 0 | G | A | 100.0%
| 145.4
/ NA
| 41 | intergenic (+122/+84) | loiP/speB | metalloprotease LoiP/agmatinase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (21/20); total (21/20) |
ATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATC > NC_000913/3082717‑3082870
|
aTCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGc < 1:535525/81‑1 (MQ=255)
aTCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGc > 1:535569/1‑81 (MQ=255)
cTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGcc > 2:535578/1‑80 (MQ=255)
gACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGaa > 2:535563/1‑81 (MQ=255)
aCATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAAc < 1:535526/81‑1 (MQ=255)
aTGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGt < 2:535527/81‑1 (MQ=255)
aaTGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAgg > 2:535567/1‑81 (MQ=255)
aTGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGt > 2:535581/1‑81 (MQ=255)
tGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTc < 2:535528/81‑1 (MQ=255)
gCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCg < 1:535529/80‑1 (MQ=255)
caTTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATa < 1:535530/81‑1 (MQ=255)
tttGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAg > 1:535584/1‑81 (MQ=255)
gTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGc < 1:535531/80‑1 (MQ=255)
ttACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGt > 2:535593/1‑81 (MQ=255)
cTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCAc < 1:535532/81‑1 (MQ=255)
gtgCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCAcgcc > 2:535585/1‑81 (MQ=255)
gtgCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCAcgcc > 2:535579/1‑81 (MQ=255)
tgCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCAcgcc < 2:535533/80‑1 (MQ=255)
gcgcATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCAcgccg > 1:535571/1‑80 (MQ=255)
cgcATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCa > 1:535575/1‑81 (MQ=255)
cgcATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCa > 2:535572/1‑81 (MQ=255)
cgcATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTACCGAACGTAGGTCGGATAAGGCGTTCACGCCGCa > 2:535561/1‑81 (MQ=255)
cATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATc < 2:535534/81‑1 (MQ=255)
aTTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATcc > 2:535587/1‑81 (MQ=255)
aTTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATcc > 1:535586/1‑81 (MQ=255)
ccGGATGCGATGCTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAc < 1:535535/80‑1 (MQ=255)
gatgcgatgcTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTTGGATAAGGCGTTCACGCCGCATCCGACAtt > 2:535577/1‑80 (MQ=255)
tgcgatgcTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAAt < 1:535536/81‑1 (MQ=255)
cgatgcTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATgg < 2:535538/81‑1 (MQ=255)
cgatgcTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATg < 2:535537/80‑1 (MQ=255)
atgcTGGCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCa > 1:535576/1‑81 (MQ=255)
ggCGCATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGttt > 1:535597/1‑81 (MQ=255)
gcgcATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGtttt < 1:535540/81‑1 (MQ=255)
gcgcATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGtt < 2:535539/79‑1 (MQ=255)
cgcATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCTGCATCCGACATTAATGGCACGTTTTa > 1:535582/1‑81 (MQ=255)
cgcATCTTATCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTa < 1:535541/81‑1 (MQ=255)
aTCCGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCg < 2:535542/77‑1 (MQ=255)
cGGCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGcgcat < 1:535543/81‑1 (MQ=255)
ggCCTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGcgcatc < 2:535544/81‑1 (MQ=255)
cTACGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGcgcatcgca > 2:535594/1‑81 (MQ=255)
aCGAGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCgcatcgcatc > 2:535609/1‑81 (MQ=255)
|
ATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATC > NC_000913/3082717‑3082870
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
