Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,162,554 |
A→G |
L39P (CTA→CCA) |
ftsP ← |
cell division protein required during stress conditions |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,162,554 | 0 | A | G | 100.0%
| 143.5
/ NA
| 40 | L39P (CTA→CCA) | ftsP | cell division protein required during stress conditions |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (21/19); total (21/19) |
GCGCGTGTCCCTGGCGTAAATGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTAGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAGGGGAACAGCGCCTGCACAAAGT > NC_000913/3162476‑3162625
|
gcgcgTGTCCCTGGCGTAAATGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGgc > 1:551732/1‑81 (MQ=255)
cgcgTGTCCCTGGCGTAAATGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGgcg > 2:551755/1‑81 (MQ=255)
gcgTGTCCCTGGCGTAAATGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGgcgg > 2:551770/1‑81 (MQ=255)
cccTGGCGTAAATGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAAc > 2:551761/1‑81 (MQ=255)
ccTGGCGTAAATGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAAc < 2:551708/80‑1 (MQ=255)
ggCGTAAATGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCTACGGCGAGATTCAAGTGGCGGCGGAACggg > 2:551752/1‑80 (MQ=255)
cGTAAATGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAg > 1:551757/1‑81 (MQ=255)
aaaTGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCgg > 1:551765/1‑81 (MQ=255)
aaTGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGt > 1:551764/1‑81 (MQ=255)
aaTGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGt < 2:551709/81‑1 (MQ=255)
aTGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGtt > 2:551760/1‑81 (MQ=255)
aTGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGtt < 1:551710/81‑1 (MQ=255)
cAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGt > 2:551772/1‑81 (MQ=255)
cAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGt > 1:551766/1‑81 (MQ=255)
gcgcACGTTGTACAGTCATAAACAGGGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGcc > 2:551763/1‑81 (MQ=255)
cgcACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGccc < 2:551711/81‑1 (MQ=255)
cgcACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGccc < 1:551713/81‑1 (MQ=255)
cgcACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGcc < 2:551712/80‑1 (MQ=255)
cACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCgg > 2:551753/1‑81 (MQ=255)
gTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTg < 1:551714/81‑1 (MQ=255)
gTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTg > 2:551750/1‑81 (MQ=255)
ttGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTgc > 1:551777/1‑81 (MQ=255)
ttGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTgc < 2:551715/81‑1 (MQ=255)
gTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTgcgc > 1:551758/1‑81 (MQ=255)
aGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGc > 1:551767/1‑81 (MQ=255)
cATAAACAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCtt > 1:551759/1‑81 (MQ=255)
aaCAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAgg < 2:551717/81‑1 (MQ=255)
aaCAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAgg < 1:551718/81‑1 (MQ=255)
aaCAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAgg < 1:551716/81‑1 (MQ=255)
aCAGCGGTTGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAggg > 2:551769/1‑81 (MQ=255)
ttGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAGGGGAACAgc < 1:551719/81‑1 (MQ=255)
tGCCCACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAGGGGAACAgcg > 2:551771/1‑81 (MQ=255)
ccACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAGGGGAACAGCGCCt < 2:551721/81‑1 (MQ=255)
ccACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAGGGGAACAGCGCCt < 1:551720/81‑1 (MQ=255)
cACGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAGGGGAACAGCGCCTg < 2:551722/81‑1 (MQ=255)
aCGGCGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAGGGGAACAGCGCCTGc < 1:551723/81‑1 (MQ=255)
aCGGCGAGAGTCGAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAGGGGGACAGCGCCTGc < 2:551724/81‑1 (MQ=255)
cGAGATTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAGGGGAACAGCGCCTGCACaa < 2:551725/81‑1 (MQ=255)
gaTTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAGGGGAACAGCGCCTGCACAAAGt < 2:551726/81‑1 (MQ=255)
gaTTCAAGTGGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAGGGGAACAGCGCCTGCACAAAGt > 2:551775/1‑81 (MQ=255)
|
GCGCGTGTCCCTGGCGTAAATGACCAGTGCGCACGTTGTACAGTCATAAACAGCGGTTGCCCACGGCGAGATTCAAGTAGCGGCGGAACGGGTAGCGGTTGCTGTTGCCCGGCTGCGCTGGCCTTCAGGGGAACAGCGCCTGCACAAAGT > NC_000913/3162476‑3162625
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
