Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,301,885 |
A→G |
D134G (GAC→GGC) |
yhbU → |
putative peptidase YhbU |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,301,885 | 0 | A | G | 100.0%
| 152.2
/ NA
| 43 | D134G (GAC→GGC) | yhbU | putative peptidase YhbU |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (26/17); total (26/17) |
TTGAGCGCCACGTATCGGTGCAGGCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGACGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTCACACCTGTACCA > NC_000913/3301813‑3301961
|
ttGAGCGCCACGTATCGGTGCAGGCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTc > 2:579056/1‑81 (MQ=255)
gAGCGCCACGTATCGGTGCAGGCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTcgc > 1:579043/1‑81 (MQ=255)
aGCGCAACGTATCGGTGCAGGCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTcgc < 1:578982/80‑1 (MQ=255)
cgcCACGTATCGGTGCAGGCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCgtg < 2:578983/81‑1 (MQ=255)
gcCACGTATCGGTGCAGGCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCgtgg < 1:578984/81‑1 (MQ=255)
ccACGTATCGGTGCAGGCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCgtggt < 2:578985/81‑1 (MQ=255)
gTATCGGTGCAGGCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGtgctg < 1:578986/81‑1 (MQ=255)
aTCGGTGCAGGCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGcc > 2:579029/1‑81 (MQ=255)
tCGGTGCAGGCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGcc < 1:578987/80‑1 (MQ=255)
cAGGCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCgt < 1:578988/80‑1 (MQ=255)
ggCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGtgtt > 2:579039/1‑81 (MQ=255)
cTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGtgttgt > 2:579042/1‑81 (MQ=255)
tCGGCGACCAATGAAGTGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTc > 1:579031/1‑80 (MQ=255)
tCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTc > 2:579067/1‑80 (MQ=255)
cGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTc < 1:578989/79‑1 (MQ=255)
cGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGa > 2:579054/1‑81 (MQ=255)
ggCGACCAATGAAGCGGCGATTAACTTTTATCATCGCCATTTTTGCGTTGCTCGCGTGGTGCTGCCGCGCGTTTTGTCGAt > 2:579036/1‑81 (MQ=255)
ggCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGa < 1:578990/80‑1 (MQ=255)
ggCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGAt > 1:579046/1‑81 (MQ=255)
cGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGAtt > 2:579040/1‑80 (MQ=255)
gACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATtca > 2:579033/1‑81 (MQ=255)
aCCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATtcat < 1:578991/81‑1 (MQ=255)
aCCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATtcat < 2:578992/81‑1 (MQ=255)
ccAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATtcatc < 1:578993/81‑1 (MQ=255)
aaTGAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAg < 2:578994/81‑1 (MQ=255)
gAAGAGGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGt > 2:579045/1‑80 (MQ=255)
agagGCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGaa < 1:578995/81‑1 (MQ=255)
gCGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAaacaa > 1:579047/1‑81 (MQ=255)
cGATTAACTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAaacaac > 1:579050/1‑81 (MQ=255)
aaCTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCa > 2:579062/1‑81 (MQ=255)
aCTTTTATCATCGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCAc > 1:579060/1‑81 (MQ=255)
atcatcGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTca > 1:579075/1‑81 (MQ=255)
tcatcGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTca > 2:579053/1‑80 (MQ=255)
atcGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTcaca < 1:578996/80‑1 (MQ=255)
atcGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTcaca < 1:578997/80‑1 (MQ=255)
atcGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTCacac > 1:579064/1‑81 (MQ=255)
atcGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTCacac > 1:579049/1‑81 (MQ=255)
cGCCATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTCACACCt > 2:579061/1‑81 (MQ=255)
cATTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTCACACCTGTa > 2:579066/1‑81 (MQ=255)
aTTTTGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTCACACCTGTAc > 1:579057/1‑81 (MQ=255)
ttttGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTCACACCTGTAcc < 1:578998/81‑1 (MQ=255)
tttGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTCACACCTGTACCa > 1:579078/1‑81 (MQ=255)
tttGGCGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTCACACCTGTACCa > 1:579051/1‑81 (MQ=255)
|
TTGAGCGCCACGTATCGGTGCAGGCTTCGGCGACCAATGAAGAGGCGATTAACTTTTATCATCGCCATTTTGACGTTGCTCGCGTGGTGCTGCCGCGCGTGTTGTCGATTCATCAGGTGAAACAACTGGCACGGGTCACACCTGTACCA > NC_000913/3301813‑3301961
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
