Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,611,739 |
T→A |
intergenic (‑6/‑126) |
yhhS ← / → yhhT |
putative transporter YhhS/putative transporter YhhT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,611,739 | 0 | T | A | 100.0%
| 100.7
/ NA
| 29 | intergenic (‑6/‑126) | yhhS/yhhT | putative transporter YhhS/putative transporter YhhT |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (12/17); total (12/17) |
ATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGATCACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGC > NC_000913/3611663‑3611815
|
aTGACTATAGAGACAATGCGCAAAGTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAAcacc < 1:643874/81‑1 (MQ=255)
ataGAGACAATGCGCAAATTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACAttt > 1:643916/1‑81 (MQ=255)
taGAGACAATGCGCAAATTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACAtttt < 2:643876/81‑1 (MQ=255)
taGAGACAATGCGCAAATTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACAttt < 1:643875/80‑1 (MQ=255)
taGAGACAATGCGCAAATTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACAtt < 2:643877/79‑1 (MQ=255)
gagaCAATGCGCAAATTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACAttttt < 1:643878/80‑1 (MQ=255)
gaCAATGCGCAAATTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTac > 2:643903/1‑80 (MQ=255)
cAATGCGCAAATTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTacaac < 1:643879/81‑1 (MQ=255)
tGCGCAAATTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAgt < 2:643880/81‑1 (MQ=255)
cgcAAATTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAgtg < 1:643881/80‑1 (MQ=255)
cAAATTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAGTGttt < 1:643882/81‑1 (MQ=255)
ttCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAGTGTTTCAtt < 1:643883/81‑1 (MQ=255)
aGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCAGGCATGAGGAACACCACATTTTTACAACAGTGTTTCAtttt > 1:643915/1‑80 (MQ=255)
cgcAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTAc > 1:643912/1‑80 (MQ=255)
gcAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCa > 1:643913/1‑81 (MQ=255)
cAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCAc < 1:643884/81‑1 (MQ=255)
aaTCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCACg > 1:643923/1‑81 (MQ=255)
ccGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGc > 2:643914/1‑81 (MQ=255)
cGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGCt > 1:643920/1‑81 (MQ=255)
tttAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGCTGa < 2:643885/81‑1 (MQ=255)
aGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGCTGACGt > 1:643925/1‑81 (MQ=255)
gcgGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGCTGACGTGa > 1:643918/1‑80 (MQ=255)
cgGGTTCGGCTACGGGTTCGGGCATGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGCTGACGTGaa > 1:643930/1‑80 (MQ=255)
gggTTCGGGCATGGAGAACACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGCTGGCGTGAAAATCAGCAGTAAGa < 2:643886/81‑1 (MQ=255)
ttCGGGCATGAGGAACACCACATTGTTACAACAGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATc < 1:643887/81‑1 (MQ=255)
cGGGCATGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCa < 2:643888/80‑1 (MQ=255)
aTGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAatat > 1:643926/1‑81 (MQ=255)
tGAGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATAtt < 2:643889/81‑1 (MQ=255)
aGGAACACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGc < 2:643890/81‑1 (MQ=255)
|
ATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTTTAGCGCGGGTTCGGCTACGGGTTCGGGCATGAGGATCACCACATTTTTACAACAGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGC > NC_000913/3611663‑3611815
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
