Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A21 F26 I2 R1 11 45.3 1568876 93.5% 1466899 143.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_bme_pgi 3,816,594 Δ9 bp intergenic (‑45/‑74) rph ← / → yicC ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH/UPF0701 family protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_bme_pgi 3816594 3816602 9 45 [0] [0] 45 rph/yicC ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH/UPF0701 family protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi = 38165930 (0.000)44 (0.990) 40/284 0.2 100% intergenic (‑44/‑83) rph/yicC ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH/UPF0701 family protein
?NC_000913_3_bme_pgi 3816603 = 0 (0.000)intergenic (‑54/‑73) rph/yicC ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH/UPF0701 family protein

GATK/CNVnator alignment

N/A