Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F80 I1 R1 119 143.3 3427330 99.1% 3396484 212.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,288,568 A→G T269A (ACC→GCC)  nrfA → cytochrome c552 nitrite reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,288,5680AG100.0% 582.1 / NA 152T269A (ACC→GCC) nrfAcytochrome c552 nitrite reductase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (70/82);  total (70/82)

Only 100 of 152 total aligned reads displayed.

CATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCAAGGTTGAAGATCAAC  >  NC_000913/4288336‑4288802
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                          
   tGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAg                                                                                                                                                                                                                                   >  2:1075357/1‑239 (MQ=255)
     gTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAg                                                                                                                                                                                                                                   >  2:114293/1‑237 (MQ=255)
           cTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTc                                                                                                                                                                                                                          <  2:970090/240‑1 (MQ=255)
           cTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTc                                                                                                                                                                                                                          <  2:1174193/240‑1 (MQ=255)
             tttGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTc                                                                                                                                                                                                                          <  2:650266/238‑1 (MQ=255)
              ttGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACg                                                                                                                                                                                                                       >  1:1227555/1‑240 (MQ=255)
                    aaGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTaaaa                                                                                                                                                                                                                 <  1:423716/240‑1 (MQ=255)
                         ggACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAaacaac                                                                                                                                                                                                            <  2:308884/240‑1 (MQ=255)
                            cGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTg                                                                                                                                                                                                         <  1:1353167/240‑1 (MQ=255)
                                        cAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTaaaa                                                                                                                                                                                                                 <  2:673116/220‑1 (MQ=255)
                                                        gTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAg                                                                                                                                                                                                                                   >  2:551281/1‑186 (MQ=255)
                                                           aGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTc                                                                                                                                                                                                                          >  2:483354/1‑192 (MQ=255)
                                                           aGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTg                                                                                                                                                                           >  1:572620/1‑239 (MQ=255)
                                                            gTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCt                                                                                                                                                                                                     >  2:1124249/1‑212 (MQ=255)
                                                            gTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGc                                                                                                                                                                          >  2:1201096/1‑239 (MQ=255)
                                                                 aggtgGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCa                                                                                                                                                                         <  1:914125/233‑1 (MQ=255)
                                                                   gtgGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAg                                                                                                                                                                             >  2:1399164/1‑229 (MQ=255)
                                                                      gAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGATAAAAACAACGTGACCTGTATCGACTGCCa                                                                                                                                                                                        <  1:1535622/215‑1 (MQ=255)
                                                                       aGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTAt                                                                                                                                                                                                 >  1:1542729/1‑205 (MQ=255)
                                                                       aGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGa                                                                                                                                                                >  2:895181/1‑238 (MQ=255)
                                                                       aGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGGCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCAGGAATATGAAGCCTGGACAGCGGGCATTCACGGTaaaaa                                                                                                                                                                                                                >  2:1348880/1‑190 (MQ=255)
                                                                         tATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAgg                                                                                                                                                             >  1:1211181/1‑239 (MQ=255)
                                                                         tATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  2:1235476/240‑1 (MQ=255)
                                                                         tATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  1:1020491/240‑1 (MQ=255)
                                                                         tATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  1:1018992/240‑1 (MQ=255)
                                                                          aTTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  1:953678/239‑1 (MQ=255)
                                                                          aTTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  1:1329350/239‑1 (MQ=255)
                                                                          aTTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  2:108234/239‑1 (MQ=255)
                                                                          aTTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  1:770612/239‑1 (MQ=255)
                                                                          aTTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  2:709835/239‑1 (MQ=255)
                                                                          aTTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  2:1551738/239‑1 (MQ=255)
                                                                          aTTACTACGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  1:1135152/239‑1 (MQ=255)
                                                                            tACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCaaa                                                                                                                                                         <  2:341084/240‑1 (MQ=255)
                                                                            tACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCaaa                                                                                                                                                         >  1:341084/1‑240 (MQ=255)
                                                                              cTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAAc                                                                                                                                                        >  1:651460/1‑239 (MQ=255)
                                                                                 cGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCAAGGTAAAAACAACg                                                                                                                                                                                                           >  1:630347/1‑185 (MQ=255)
                                                                                   aCGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTaca                                                                                                                                                  >  1:99706/1‑240 (MQ=255)
                                                                                   aCGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTaca                                                                                                                                                  >  1:472707/1‑240 (MQ=255)
                                                                                   aCGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTac                                                                                                                                                   >  1:221721/1‑239 (MQ=255)
                                                                                     ggCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAaacaac                                                                                                                                                                                                            <  1:1495706/180‑1 (MQ=255)
                                                                                     ggCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  1:878398/228‑1 (MQ=255)
                                                                                                aGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATaaaa                                                                                                                                      >  1:277854/1‑239 (MQ=255)
                                                                                                                 gggATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  2:1692800/200‑1 (MQ=255)
                                                                                                                   gATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATaa                                                                                                                   >  1:753149/1‑239 (MQ=255)
                                                                                                                   gATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAAc                                                                                                                  <  2:278685/240‑1 (MQ=255)
                                                                                                                    aTGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACt                                                                                                                 <  1:1626027/240‑1 (MQ=255)
                                                                                                                    aTGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACt                                                                                                                 <  1:1408913/240‑1 (MQ=255)
                                                                                                                     tGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACt                                                                                                                 <  2:1502167/239‑1 (MQ=255)
                                                                                                                              gAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGa                                                                                                        <  1:1700959/239‑1 (MQ=255)
                                                                                                                                  gTCGAAAATATGGGGCAGTATTACGACAAAACTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGAc                                                                                                                                             <  2:1335698/198‑1 (MQ=255)
                                                                                                                                       aaaTATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGaa                                                                                              <  1:1479238/240‑1 (MQ=255)
                                                                                                                                            tGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGcc                                                                                         <  2:1691925/240‑1 (MQ=255)
                                                                                                                                            tGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGcc                                                                                         <  1:25934/240‑1 (MQ=255)
                                                                                                                                             ggAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGcc                                                                                         <  2:788358/239‑1 (MQ=255)
                                                                                                                                             ggAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGcc                                                                                         <  1:1685233/239‑1 (MQ=255)
                                                                                                                                             ggAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGcc                                                                                         <  1:360543/239‑1 (MQ=255)
                                                                                                                                             ggAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGcc                                                                                         <  1:763576/239‑1 (MQ=255)
                                                                                                                                                   gNATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  2:415032/166‑1 (MQ=255)
                                                                                                                                                      ttACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGa                                                                               >  1:487303/1‑240 (MQ=255)
                                                                                                                                                         cGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCa                                                                                                                                                           >  1:94706/1‑161 (MQ=255)
                                                                                                                                                         cGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATAcc                                                                                    >  2:173279/1‑232 (MQ=255)
                                                                                                                                                         cGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACaa                                                                            >  2:1345071/1‑240 (MQ=255)
                                                                                                                                                           aCAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACaaa                                                                           >  1:119242/1‑239 (MQ=255)
                                                                                                                                                            cAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGc                                                                         >  1:176853/1‑240 (MQ=255)
                                                                                                                                                              aaaTTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            >  1:262080/1‑155 (MQ=255)
                                                                                                                                                              aaaTTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  2:262080/155‑1 (MQ=255)
                                                                                                                                                              aaaTTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTg                                                                       >  1:1116867/1‑240 (MQ=255)
                                                                                                                                                              aaaTTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTg                                                                       >  2:1267529/1‑240 (MQ=255)
                                                                                                                                                              aaaTTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTg                                                                       >  1:281326/1‑240 (MQ=255)
                                                                                                                                                              aaaTTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTg                                                                       >  1:1375458/1‑240 (MQ=255)
                                                                                                                                                              aaaTTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTg                                                                       >  1:1548808/1‑240 (MQ=255)
                                                                                                                                                               aaTTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGc                                                                      >  1:30715/1‑240 (MQ=255)
                                                                                                                                                                         tctGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCg                                                                                                <  2:170023/204‑1 (MQ=255)
                                                                                                                                                                         tctGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCaaaa                                                             <  1:1358108/239‑1 (MQ=255)
                                                                                                                                                                                ggACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTTTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTcg                                                     <  1:903869/240‑1 (MQ=255)
                                                                                                                                                                                ggACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTcg                                                     <  1:278251/240‑1 (MQ=255)
                                                                                                                                                                                  aCTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTcgc                                                    <  2:1443866/239‑1 (MQ=255)
                                                                                                                                                                                  aCTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTcgc                                                    <  1:1435413/239‑1 (MQ=255)
                                                                                                                                                                                  aCTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTcgc                                                    >  2:397589/1‑239 (MQ=255)
                                                                                                                                                                                  aCTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTc                                                      >  1:1432656/1‑237 (MQ=255)
                                                                                                                                                                                           cTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTaa                                           >  1:1531070/1‑239 (MQ=255)
                                                                                                                                                                                           cTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAg                                          <  2:756419/240‑1 (MQ=255)
                                                                                                                                                                                           cTGTCGAAAACGCCAATGATGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCGAACTCTACACCGACCAGAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCt                                                                        >  1:583910/1‑210 (MQ=255)
                                                                                                                                                                                            tGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGc                                                                                                                                                                                                                                  >  2:1668933/1‑55 (MQ=255)
                                                                                                                                                                                            tGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTtgt                                                                                                   >  2:1048775/1‑182 (MQ=255)
                                                                                                                                                                                            tGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAg                                          >  2:926930/1‑239 (MQ=255)
                                                                                                                                                                                            tGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGc                                         >  1:1026249/1‑240 (MQ=255)
                                                                                                                                                                                             gTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGc                                         <  1:496648/239‑1 (MQ=255)
                                                                                                                                                                                              tCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGcc                                                                                         <  2:13694/190‑1 (MQ=255)
                                                                                                                                                                                                    aCGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  2:312582/117‑1 (MQ=255)
                                                                                                                                                                                                        cAATGCTGAAAGCGCAGCACCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAAc                              >  2:508305/1‑239 (MQ=255)
                                                                                                                                                                                                                      cagcaCCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGGCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCAAg               >  1:714010/1‑240 (MQ=255)
                                                                                                                                                                                                                      cagcaCCCAGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCa                 <  2:599104/238‑1 (MQ=255)
                                                                                                                                                                                                                       agcaCCCGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACt                                                                                                                 <  1:1063511/141‑1 (MQ=255)
                                                                                                                                                                                                                           cccGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCAAGGTTGa          <  2:623966/240‑1 (MQ=255)
                                                                                                                                                                                                                             cGGAATATGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCAAGGTTGAAg        <  1:1091863/240‑1 (MQ=255)
                                                                                                                                                                                                                             cGGAATAAGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCCACTGACATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTCGTAATc                                                                                                                             <  2:1433676/123‑1 (MQ=255)
                                                                                                                                                                                                                                   atGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            >  2:130952/1‑86 (MQ=255)
                                                                                                                                                                                                                                   atGAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGc                                                                                                                                                            <  1:130952/86‑1 (MQ=255)
                                                                                                                                                                                                                                     gAAGCCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCAAGGTTGAAGATCAAc  >  2:437182/1‑238 (MQ=255)
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                          
CATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAAGTGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCAAGGTTGAAGATCAAC  >  NC_000913/4288336‑4288802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A