Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F60 I1 R1 14 101.6 3468360 98.9% 3430208 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_000913 2,765,463 (TATGGCAC)6→7 intergenic (‑310/+50) abpA ← / ← yfjM CP4‑57 prophage; anti‑bacteriophage protein/CP4‑57 prophage; protein YfjM

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2765412 =7 (0.070)71 (1.020) 45/190 0.2 96.8% intergenic (‑259/+101) abpA/yfjM CP4‑57 prophage; anti‑bacteriophage protein/CP4‑57 prophage; protein YfjM
?NC_000913 = 2765419 0 (0.000)intergenic (‑266/+94) abpA/yfjM CP4‑57 prophage; anti‑bacteriophage protein/CP4‑57 prophage; protein YfjM

Only 100 of 154 total aligned reads displayed.

AACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2765593‑2765412
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccatagtgccatagtgccatagtgccatagtgccatagtgcCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCT  <  NC_000913/2765419‑2765281
                                                                                                                                                                                                                                                                                                                                 
AACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGT                                                                                                                                                                                       >  2:1560227/1‑140
AACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGT                                                                                                                                                                                       <  1:267575/140‑1
    ATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCA                                                                                                                                                                                   <  2:410104/140‑1
    ATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCA                                                                                                                                                                                   <  1:797940/140‑1
    ATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCA                                                                                                                                                                                   <  1:884466/140‑1
     TATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGGGCCAc                                                                                                                                                                                  >  2:1651806/1‑139
       TAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAG                                                                                                                                                                                >  2:462074/1‑140
       TAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAG                                                                                                                                                                                <  2:849621/140‑1
       TAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAG                                                                                                                                                                                >  1:605723/1‑140
        AGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGT                                                                                                                                                                               <  1:1170212/140‑1
           AAGCCATGAACACGCGATGTTGACATTGCTC‑AAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCA                                                                                                                                                                           <  1:1673126/140‑1
            AGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCA                                                                                                                                                                           <  1:1057317/140‑1
            AGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCA                                                                                                                                                                           <  1:1149618/140‑1
            AGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCA                                                                                                                                                                           >  2:1529963/1‑140
             GCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCAT                                                                                                                                                                          >  2:771579/1‑140
             GCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCAT                                                                                                                                                                          >  1:1606868/1‑140
               CATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAG                                                                                                                                                                        >  1:698573/1‑140
                 TGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTG                                                                                                                                                                      >  2:1558949/1‑140
                 TGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTG                                                                                                                                                                      >  2:306172/1‑140
                 TGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTG                                                                                                                                                                      >  2:444001/1‑140
                  GAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGC                                                                                                                                                                     <  2:1673676/140‑1
                  GAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGC                                                                                                                                                                     <  1:450087/140‑1
                    ACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                                   <  2:1585690/140‑1
                      ACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATA                                                                                                                                                                 <  1:831903/140‑1
                        GCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGT                                                                                                                                                               >  2:1397618/1‑140
                        GCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGT                                                                                                                                                               >  1:1149173/1‑140
                             GTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCAT                                                                                                                                                          >  2:1461139/1‑140
                              TTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATA                                                                                                                                                         >  2:893948/1‑140
                               TGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAG                                                                                                                                                        <  2:113789/140‑1
                                  CATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGC                                                                                                                                                     <  2:1240320/140‑1
                                    TTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                   <  2:71019/140‑1
                                    TTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                   <  1:1479189/140‑1
                                                CATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGT                                                                                                                                       <  2:1313005/140‑1
                                                 ATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTG                                                                                                                                      <  1:242949/140‑1
                                                     AGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGT                                                                                                                                  >  2:515235/1‑140
                                                       ATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTG                                                                                                                                <  2:217527/140‑1
                                                        TATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGG                                                                                                                               >  2:296301/1‑140
                                                        TATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGG                                                                                                                               <  1:1072540/140‑1
                                                          TGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCG                                                                                                                             >  1:588560/1‑140
                                                                TACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCA                                                                                                                       >  1:352006/1‑140
                                                                TACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCA                                                                                                                       >  2:572126/1‑140
                                                                    AACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGTCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTC                                                                                                                   <  2:79781/140‑1
                                                                     ACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCT                                                                                                                  >  1:583033/1‑140
                                                                        AGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAA                                                                                                               >  1:620078/1‑140
                                                                                ATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGA                                                                                                       <  1:1529963/140‑1
                                                                                           TGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACC                                                                                            <  2:582354/140‑1
                                                                                           TGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACC                                                                                            <  2:384424/140‑1
                                                                                             TGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTT                                                                                          <  1:281653/140‑1
                                                                                               TTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAA                                                                                                      <  1:1531078/126‑1
                                                                                               TTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAA                                                                                                      >  2:1531078/1‑126
                                                                                                TTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGAT                                                                                       <  2:1149173/140‑1
                                                                                                  TATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTA                                                                                     >  2:1374090/1‑140
                                                                                                     AATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGG                                                                                  <  1:1568745/140‑1
                                                                                                     AATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGG                                                                                  <  2:35228/140‑1
                                                                                                      ATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGG                                                                                  >  1:654348/1‑139
                                                                                                       TATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCT                                                                                >  1:786794/1‑140
                                                                                                         TCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGT                                                                              >  1:333626/1‑140
                                                                                                         TCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGGGCGGTTGGCGGTCCCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGT                                                                              >  2:658519/1‑140
                                                                                                            AGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCC                                                                           <  2:588424/140‑1
                                                                                                            AGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGACGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCC                                                                           >  2:718936/1‑140
                                                                                                              TGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTA                                                                         >  1:1337754/1‑140
                                                                                                                TGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACC                                                                       <  1:1323811/140‑1
                                                                                                                TGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCAACC                                                                       <  1:421609/140‑1
                                                                                                                     ACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACG                                                                  <  1:1371270/140‑1
                                                                                                                        ATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTA                                                               >  2:1392587/1‑140
                                                                                                                            CTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTG                                                           >  1:741036/1‑140
                                                                                                                               GCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGG                                                        <  1:306172/140‑1
                                                                                                                               GCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGG                                                        <  2:352006/140‑1
                                                                                                                                CGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGC                                                       <  1:572126/140‑1
                                                                                                                                CGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACC‑TGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCA                                                      <  1:230587/140‑1
                                                                                                                                CGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACC‑TGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCA                                                      <  1:1088578/140‑1
                                                                                                                                 GGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTGCCTTACGTTAGTTGGGGCA                                                      <  2:620078/140‑1
                                                                                                                                 GGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCA                                                      <  2:1377372/140‑1
                                                                                                                                 GGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCA                                                      <  1:1560227/140‑1
                                                                                                                                     CCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTAT                                                  >  1:174255/1‑140
                                                                                                                                         AGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTA                                              >  2:808289/1‑140
                                                                                                                                           TGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGAGCAGTATGTTATA                                            >  1:1023945/1‑140
                                                                                                                                               ATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAAC                                        >  2:652618/1‑140
                                                                                                                                               ATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAAC                                        <  2:1574207/140‑1
                                                                                                                                               ATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAAC                                        <  1:1397618/140‑1
                                                                                                                                                  GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAA                                     >  2:48177/1‑140
                                                                                                                                                     CCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATT                                  <  2:1422029/140‑1
                                                                                                                                                     CCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATT                                  <  2:333626/140‑1
                                                                                                                                                     CCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATT                                  >  1:872587/1‑140
                                                                                                                                                      CATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTA                                 <  1:1030926/140‑1
                                                                                                                                                      CATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTA                                 <  1:381483/140‑1
                                                                                                                                                          GTGCCATAGTGCCATAGTGCCATAGTGCCATAGTACGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACG                             <  1:1481091/140‑1
                                                                                                                                                           TGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGT                            <  1:138050/140‑1
                                                                                                                                                           TGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGT                            <  1:1599864/140‑1
                                                                                                                                                           TGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGT                            <  1:1651806/140‑1
                                                                                                                                                             CCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCA                          >  1:758619/1‑140
                                                                                                                                                             CCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGT                            <  2:256910/138‑1
                                                                                                                                                               ATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGG                        >  1:1101286/1‑140
                                                                                                                                                                    GCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTAC                   <  2:1410703/140‑1
                                                                                                                                                                    GCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTAC                   <  1:515235/140‑1
                                                                                                                                                                    GCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTAC                   <  2:872587/140‑1
                                                                                                                                                                     CCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACA                  >  1:1309434/1‑140
                                                                                                                                                                             CCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGT          >  1:1276700/1‑140
                                                                                                                                                                             CCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGT          >  1:593326/1‑140
                                                                                                                                                                              CATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTCCCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTG         <  1:1212682/140‑1
                                                                                                                                                                                                                                                                                                                                 
AACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2765593‑2765412
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccatagtgccatagtgccatagtgccatagtgccatagtgcCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCT  <  NC_000913/2765419‑2765281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A