Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A31 F60 I1 R1 12 72.5 2467260 98.8% 2437652 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,242,737 Δ4 bp coding (777‑780/891 nt) malG ← maltose ABC transporter membrane subunit MalG

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4242737 4242740 4 64 [0] [0] 63 malG maltose ABC transporter membrane subunit MalG

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 42427360 (0.000)63 (0.870) 44/276 0.4 100% coding (781/891 nt) malG maltose ABC transporter membrane subunit MalG
?NC_000913 4242741 = 0 (0.000)coding (776/891 nt) malG maltose ABC transporter membrane subunit MalG

GATK/CNVnator alignment

N/A