Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A38 F60 I1 R1 18 80.6 2775530 99.2% 2753325 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,172,770 T→C Y81H (TAC→CAC)  mdaB → NADPH:quinone oxidoreductase MdaB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,172,7700TC100.0% 307.9 / NA 80Y81H (TAC→CAC) mdaBNADPH:quinone oxidoreductase MdaB
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/49);  total (31/49)

TGGGCATGATGTCCGCATCGTTCGCGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAATACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAATATATGCTTTCTCTGACCTGGAA  >  NC_000913/3172634‑3172906
                                                                                                                                        |                                                                                                                                        
tGGGCATGATGTCCGCATCGTTCGCGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAAcaca                                                                                                                                       <  2:39566/140‑1 (MQ=255)
tGGGCATGATGTCCGCATCGTTCGCGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAAcaca                                                                                                                                       <  1:1091769/140‑1 (MQ=255)
 gggCATGATGTCCGCATCGTTCGTGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACAt                                                                                                                                      <  1:907487/140‑1 (MQ=255)
       gatgTCCGCATCGTTCGCGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATtgatga                                                                                                                                >  1:1113128/1‑140 (MQ=255)
       gatgTCCGCATCGTTCGCGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATtgatga                                                                                                                                >  2:499705/1‑140 (MQ=255)
       gatgTCCGCATCGTTCGCGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATtgatga                                                                                                                                >  2:1219121/1‑140 (MQ=255)
        atgTCCGCATCGTTCGCGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACAt                                                                                                                                      <  2:139925/133‑1 (MQ=255)
        atgTCCGCATCGTTCGCGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACAt                                                                                                                                      >  1:139925/1‑133 (MQ=255)
                  cGTTCGCGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCg                                                                                                                     >  1:85980/1‑140 (MQ=255)
                  cGTTCGCGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCg                                                                                                                     <  2:1239789/140‑1 (MQ=255)
                     tCGCGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAg                                                                                                                  >  2:541107/1‑140 (MQ=255)
                      cgcgCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAgg                                                                                                                 >  1:572524/1‑140 (MQ=255)
                              cAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGa                                                                                                         <  2:217085/140‑1 (MQ=255)
                              cAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGa                                                                                                         <  1:821967/140‑1 (MQ=255)
                              cAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGa                                                                                                         <  1:710481/140‑1 (MQ=255)
                              cAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGa                                                                                                         <  1:512812/140‑1 (MQ=255)
                              cAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGa                                                                                                         <  2:820724/140‑1 (MQ=255)
                              cAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGa                                                                                                         <  1:404474/140‑1 (MQ=255)
                              cAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGa                                                                                                         <  1:1323800/140‑1 (MQ=255)
                              cAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCACCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGa                                                                                                         <  2:466921/140‑1 (MQ=255)
                                gCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACg                                                                                                       <  1:499705/140‑1 (MQ=255)
                                gCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCACCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACg                                                                                                       <  2:1080384/140‑1 (MQ=255)
                                  gACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCt                                                                                                     <  1:1017197/140‑1 (MQ=255)
                                   aCTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTg                                                                                                    <  2:1322080/140‑1 (MQ=255)
                                       cGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATg                                                                                                >  1:406167/1‑140 (MQ=255)
                                          tGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCa                                                                                             >  1:642069/1‑140 (MQ=255)
                                            tCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGc                                                                                           >  1:448580/1‑140 (MQ=255)
                                             cAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCg                                                                                          <  1:146350/140‑1 (MQ=255)
                                             cAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCg                                                                                          >  2:1022491/1‑140 (MQ=255)
                                                    gAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCg                                                                                   >  2:972530/1‑140 (MQ=255)
                                                      aGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTa                                                                                 >  1:1285616/1‑140 (MQ=255)
                                                      aGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTa                                                                                 <  2:1303612/140‑1 (MQ=255)
                                                      aGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTa                                                                                 >  2:1175949/1‑140 (MQ=255)
                                                       gTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTAc                                                                                <  2:834657/140‑1 (MQ=255)
                                                       gTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTAc                                                                                <  1:569543/140‑1 (MQ=255)
                                                          cAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCg                                                                             >  1:66366/1‑140 (MQ=255)
                                                                         gCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGaa                                                              >  2:607891/1‑140 (MQ=255)
                                                                           tGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGaaaa                                                            <  2:938106/140‑1 (MQ=255)
                                                                             aTGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGaaaaaa                                                          >  1:883479/1‑140 (MQ=255)
                                                                             aTGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGaaaaaa                                                          >  1:1117422/1‑140 (MQ=255)
                                                                             aTGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGaaaaaa                                                          <  2:79204/140‑1 (MQ=255)
                                                                                  gtgATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACgg                                                     >  2:635541/1‑140 (MQ=255)
                                                                                  gtgATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACgg                                                     >  2:1233729/1‑140 (MQ=255)
                                                                                     aTCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTc                                                  >  1:101832/1‑140 (MQ=255)
                                                                                        tGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCcgg                                               <  1:774266/140‑1 (MQ=255)
                                                                                        tGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCcgg                                               <  2:448580/140‑1 (MQ=255)
                                                                                        tGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCcgg                                               <  1:1175949/140‑1 (MQ=255)
                                                                                        tGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCcgg                                               <  1:1233729/140‑1 (MQ=255)
                                                                                        tGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCcgg                                               <  1:1258285/140‑1 (MQ=255)
                                                                                        tGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCcgg                                               <  2:1285616/140‑1 (MQ=255)
                                                                                        tGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCcgg                                               <  2:1224288/140‑1 (MQ=255)
                                                                                        tGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCcgg                                               <  2:883479/140‑1 (MQ=255)
                                                                                        tGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCcgg                                               <  2:1130181/140‑1 (MQ=255)
                                                                                        tGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCcgg                                               <  2:558671/140‑1 (MQ=255)
                                                                                        tGGCAGATGCCAGGCTGGTGGATGGGCGCGCCATGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCcgg                                               <  1:1238557/140‑1 (MQ=255)
                                                                                          gCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCcggcg                                             >  1:1319767/1‑140 (MQ=255)
                                                                                             gATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGACGGcc                                          <  2:1113128/140‑1 (MQ=255)
                                                                                               tGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGACACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTg                                        >  2:982472/1‑140 (MQ=255)
                                                                                                  cAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTa                                     <  1:583807/140‑1 (MQ=255)
                                                                                                    ggCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACa                                   >  2:853795/1‑140 (MQ=255)
                                                                                                    ggCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACa                                   >  1:946688/1‑140 (MQ=255)
                                                                                                     gCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAg                                  <  2:66366/140‑1 (MQ=255)
                                                                                                       tggtggATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAggg                                <  2:406167/140‑1 (MQ=255)
                                                                                                       tggtggATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAggg                                <  2:1377429/140‑1 (MQ=255)
                                                                                                         gtggATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCa                              <  1:390564/140‑1 (MQ=255)
                                                                                                         gtggATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCa                              <  1:541107/140‑1 (MQ=255)
                                                                                                          tggATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCaa                             <  2:553405/140‑1 (MQ=255)
                                                                                                          tggATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCaa                             <  1:116346/140‑1 (MQ=255)
                                                                                                          tggATGGGCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCaa                             <  1:432907/140‑1 (MQ=255)
                                                                                                               gggCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCaa                             <  1:478230/135‑1 (MQ=255)
                                                                                                               gggCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCaa                             >  2:478230/1‑135 (MQ=255)
                                                                                                               gggCGCGCCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAat                        >  2:828572/1‑140 (MQ=255)
                                                                                                                   gcgcCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAatatat                    >  2:329587/1‑140 (MQ=255)
                                                                                                                    cgcCGTGGACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAATATATg                   >  2:827246/1‑140 (MQ=255)
                                                                                                                          ggACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAATATATGCTTtct             <  2:642069/140‑1 (MQ=255)
                                                                                                                          ggACAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGC‑GTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAATATATGCTTtctc            <  1:1201384/140‑1 (MQ=255)
                                                                                                                             cAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAATATATGCTTTCTCTg          <  2:572524/140‑1 (MQ=255)
                                                                                                                             cAGTGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAATATATGCTTTCTCTg          <  1:635541/140‑1 (MQ=255)
                                                                                                                                tGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAATATATGCTTTCTCTGAcc       <  2:754185/140‑1 (MQ=255)
                                                                                                                                tGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAATATATGCTTTCTCTGAcc       >  2:1350054/1‑140 (MQ=255)
                                                                                                                                tGAAAAAACACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAATATATGCTTTCTCTGAcc       >  2:288453/1‑140 (MQ=255)
                                                                                                                                     aaaCACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAATATATGCTTTCTCTGACCTGGaa  <  1:1377543/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
TGGGCATGATGTCCGCATCGTTCGCGCCGACAGCGACTACGATGTCAAAGCGGAAGTACAAAACTTTCTCTGGGCTGATGTGGTGATCTGGCAGATGCCAGGCTGGTGGATGGGCGCGCCGTGGACAGTGAAAAAATACATTGATGATGTATTCACCGAAGGTCACGGGACGCTGTATGCCAGCGATGGTCGTACCCGCAAAGATCCGTCGAAAAAATACGGTTCCGGCGGCCTGGTACAGGGCAAAAAATATATGCTTTCTCTGACCTGGAA  >  NC_000913/3172634‑3172906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A