Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A38 F60 I1 R1	18	80.6	2775530	99.2%	2753325	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,298,853	T→G	intergenic (‑7/‑121)	yraR ← / → yhbO	putative nucleoside‑diphosphate‑sugar epimerase/protein/nucleic acid deglycase 2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,298,853	0	T	G	100.0%	263.8 / NA	68	intergenic (‑7/‑121)	yraR/yhbO	putative nucleoside‑diphosphate‑sugar epimerase/protein/nucleic acid deglycase 2
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (31/37); total (31/37)

CCCCGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAACGCGGAGGAAGCATGAGTAAGAA  >  NC_000913/3298717‑3298984

ccccGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCt                                                                                                                                  <  1:686179/140‑1 (MQ=255)

ccccGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCt                                                                                                                                  <  2:211265/140‑1 (MQ=255)

 cccGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCtt                                                                                                                                 >  2:217510/1‑140 (MQ=255)

 cccGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCtt                                                                                                                                 >  2:660294/1‑140 (MQ=255)

 cccGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCtt                                                                                                                                 >  1:46281/1‑140 (MQ=255)

  ccGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCttt                                                                                                                                >  2:684293/1‑140 (MQ=255)

   cGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTa                                                                                                                               >  1:654656/1‑140 (MQ=255)

   cGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTa                                                                                                                               <  1:413444/140‑1 (MQ=255)

     ggCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACa                                                                                                                             >  1:1256184/1‑140 (MQ=255)

     ggCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACa                                                                                                                             <  1:1327134/140‑1 (MQ=255)

     ggCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACa                                                                                                                             <  2:263674/140‑1 (MQ=255)

     ggCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACa                                                                                                                             >  2:597405/1‑140 (MQ=255)

        atatCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCGGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGaa                                                                                                                          >  1:820426/1‑140 (MQ=255)

           tCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTg                                                                                                                       >  1:717629/1‑140 (MQ=255)

           tCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTg                                                                                                                       >  1:240628/1‑140 (MQ=255)

           tCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTg                                                                                                                       >  1:230698/1‑140 (MQ=255)

            cGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGt                                                                                                                      <  1:1145670/140‑1 (MQ=255)

                 aaCGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGcc                                                                                                                 <  1:273735/140‑1 (MQ=255)

                    ggACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTg                                                                                                              <  2:373620/140‑1 (MQ=255)

                    ggACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTg                                                                                                              <  2:23343/140‑1 (MQ=255)

                    ggACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTAACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTg                                                                                                              <  1:739591/140‑1 (MQ=255)

                          cgcgtcgGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTcc                                                                                                        <  2:466904/140‑1 (MQ=255)

                           gcgtcgGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCa                                                                                                       >  1:404810/1‑140 (MQ=255)

                            cgtcgGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCAc                                                                                                      <  2:717629/140‑1 (MQ=255)

                            cgtcgGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCAc                                                                                                      <  1:660294/140‑1 (MQ=255)

                                 gcgcAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTc                                                                                                 <  2:654656/140‑1 (MQ=255)

                                      gcaATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCa                                                                                            <  2:1084444/140‑1 (MQ=255)

                                      gcaATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCa                                                                                            <  1:684293/140‑1 (MQ=255)

                                      gcaATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCa                                                                                            <  1:793867/140‑1 (MQ=255)

                                        aaTGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCAcc                                                                                          <  1:736185/140‑1 (MQ=255)

                                        aaTGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCAcc                                                                                          <  2:46281/140‑1 (MQ=255)

                                        aaTGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCAcc                                                                                          <  2:545177/140‑1 (MQ=255)

                                        aaTGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCAcc                                                                                          <  1:1095678/140‑1 (MQ=255)

                                          tGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAg                                                                                        <  2:240628/140‑1 (MQ=255)

                                                tAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTaa                                                                                  <  1:1118032/140‑1 (MQ=255)

                                                 aaCTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCa                                                                                            >  1:1214325/1‑129 (MQ=255)

                                                 aaCTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCa                                                                                            <  2:1214325/129‑1 (MQ=255)

                                                        ggTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCAt                                                                          <  2:866638/140‑1 (MQ=255)

                                                               tAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTaa                                                                   <  1:597405/140‑1 (MQ=255)

                                                                       aTCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCa                                                                           <  1:889287/124‑1 (MQ=255)

                                                                       aTCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCa                                                                           >  2:889287/1‑124 (MQ=255)

                                                                        tCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCg                                                          >  2:915627/1‑140 (MQ=255)

                                                                            cagcagGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATtg                                                      >  2:458850/1‑140 (MQ=255)

                                                                                   tGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTGCCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGaaa                                               <  1:620474/140‑1 (MQ=255)

                                                                                    gACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAAt                                              <  1:458850/140‑1 (MQ=255)

                                                                                    gACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAAt                                              <  2:1256184/140‑1 (MQ=255)

                                                                                     aCCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAAtt                                             >  1:870421/1‑140 (MQ=255)

                                                                                         cccACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGcc                                         >  1:1206695/1‑140 (MQ=255)

                                                                                            accaGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCa                                      <  2:820426/140‑1 (MQ=255)

                                                                                            accaGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCa                                      <  1:217510/140‑1 (MQ=255)

                                                                                            accaGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCa                                      >  1:2321/1‑140 (MQ=255)

                                                                                                        gcgcCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGcaaca                          >  2:932657/1‑140 (MQ=255)

                                                                                                        gcgcCTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGcaaca                          >  2:804283/1‑140 (MQ=255)

                                                                                                           ccTGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAAcg                       <  2:230698/140‑1 (MQ=255)

                                                                                                             tGTAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAAcgcg                     <  1:58708/140‑1 (MQ=255)

                                                                                                               tAATCAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAACGCgga                   <  1:915627/140‑1 (MQ=255)

                                                                                                                   cAGTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAACGCGGAGGaa               >  1:1163648/1‑140 (MQ=255)

                                                                                                                     gTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAAcg                       >  1:702617/1‑130 (MQ=255)

                                                                                                                     gTACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAAcg                       <  2:702617/130‑1 (MQ=255)

                                                                                                                      tACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAACGCGGAGGAAGCa            >  2:1173198/1‑140 (MQ=255)

                                                                                                                      tACCTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAACGCGGAGGAAGCa            >  1:790945/1‑140 (MQ=255)

                                                                                                                        ccTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAAcg                       <  2:552714/127‑1 (MQ=255)

                                                                                                                        ccTGACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAAcg                       >  1:552714/1‑127 (MQ=255)

                                                                                                                           gACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAACGCGGAGGAAGCATGAGt       >  1:266091/1‑140 (MQ=255)

                                                                                                                           gACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAACGCGGAGGAAGCATGAGt       >  2:1157264/1‑140 (MQ=255)

                                                                                                                           gACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAACGCGGAGGAAGCATGAGt       >  1:510033/1‑140 (MQ=255)

                                                                                                                           gACTCATCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAACGCGGAGGAAGCATGAGt       >  1:723673/1‑140 (MQ=255)

                                                                                                                                aTCTTCGCGCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAACGCGGAGGAAGCATGAGTAAGaa  >  1:389261/1‑140 (MQ=255)

CCCCGGGCATATCGCCCAACGGACGTCGCGTCGGCGCAGCAATGGCGTTAACTTTCGGTTCGTTAATCAACATCCGCAGCAGGTGACCGCCCACCAGCCCCGTTGCGCCTGTAATCAGTACCTGACTCATCTTCGCTCCTTTACAGAATTGTCTGCCTTGCGCTCCACGGCTCATGCACCAGGCTTAATAGACCATGAGGTAATTATCCCCGATTGTGGGAAATTCGCCTCATCCAATGCAACAACGCGGAGGAAGCATGAGTAAGAA  >  NC_000913/3298717‑3298984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A