Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A45 F60 I1 R1	18	92.2	3142574	99.1%	3114290	138.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,390,993	G→C	P346A (CCG→GCG)	tldD ←	metalloprotease TldD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,390,993	0	G	C	100.0%	277.9 / NA	72	P346A (CCG→GCG)	tldD	metalloprotease TldD
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (34/38); total (34/38)

CGGTGCATAGATACCGTACTCAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGGCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGTCATCAATCGCCACCGAACCTCGGCGATCGACCATCGTG  >  NC_000913/3390862‑3391129

cGGTGCATAGATACCGTACTCAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATcc                                                                                                                                  >  1:76981/1‑140 (MQ=255)

    gCATAGATACCGTACTCAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCAt                                                                                                                              >  2:1320670/1‑140 (MQ=255)

        aGATACCGTACTCAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCaaa                                                                                                                          <  2:1004049/140‑1 (MQ=255)

             ccGTACTCAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAAcgcgc                                                                                                                     >  1:716105/1‑140 (MQ=255)

             ccGTACTCAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAAcgcgc                                                                                                                     >  1:216520/1‑140 (MQ=255)

              cGTACTCAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAAcgcgcg                                                                                                                    >  1:655806/1‑140 (MQ=255)

              cGTACTCAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAAcgcgcg                                                                                                                    <  2:326919/140‑1 (MQ=255)

               gTACTCAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGt                                                                                                                   <  2:716105/140‑1 (MQ=255)

                  cTCAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGa                                                                                                                >  1:1353712/1‑140 (MQ=255)

                    cAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCaaa                                                                                                                          >  2:1113676/1‑128 (MQ=255)

                    cAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCaaa                                                                                                                          <  1:1113676/128‑1 (MQ=255)

                    cAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGt                                                                                                              >  1:618125/1‑140 (MQ=255)

                    cAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGt                                                                                                              >  2:157056/1‑140 (MQ=255)

                    cAACGGATTCAACAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGt                                                                                                              <  1:547668/140‑1 (MQ=255)

                     aaCGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGtt                                                                                                             >  1:759932/1‑140 (MQ=255)

                      aCGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGttt                                                                                                            >  2:771036/1‑140 (MQ=255)

                      aCGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGttt                                                                                                            <  2:154063/140‑1 (MQ=255)

                       cGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTa                                                                                                           >  2:1435334/1‑140 (MQ=255)

                         gATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATc                                                                                                         <  1:676417/140‑1 (MQ=255)

                         gATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATc                                                                                                         <  2:81263/140‑1 (MQ=255)

                           ttCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCt                                                                                                       >  2:240588/1‑140 (MQ=255)

                               atagtttCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCAt                                                                                                   >  1:832970/5‑140 (MQ=255)

                                taatTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATg                                                                                                  <  1:492685/140‑1 (MQ=255)

                                     tCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTAt                                                                                                          >  1:662112/1‑127 (MQ=255)

                                     tCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTAt                                                                                                          <  2:662112/127‑1 (MQ=255)

                                        tGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCttt                                                                                          >  1:767021/1‑140 (MQ=255)

                                        tGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCttt                                                                                          >  1:1141834/1‑140 (MQ=255)

                                            gggTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGa                                                                                      <  1:1435334/140‑1 (MQ=255)

                                               tCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAg                                                                                       <  1:649938/136‑1 (MQ=255)

                                               tCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAg                                                                                       >  2:649938/1‑136 (MQ=255)

                                               tCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATg                                                                                   <  1:157056/140‑1 (MQ=255)

                                                cGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACTGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGc                                                                                  <  2:421173/140‑1 (MQ=255)

                                                cGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGc                                                                                  <  2:759932/140‑1 (MQ=255)

                                                    ttACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGtt                                                                              <  1:1113473/140‑1 (MQ=255)

                                                      aCCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTtct                                                                            <  2:164813/140‑1 (MQ=255)

                                                            cagcaTATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCa                                                                      <  2:1141834/140‑1 (MQ=255)

                                                            cagcaTATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCa                                                                      <  2:157970/140‑1 (MQ=255)

                                                               caTATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCa                                                                   <  2:1353712/140‑1 (MQ=255)

                                                                 tataGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACg                                                                 <  1:1493574/140‑1 (MQ=255)

                                                                 tataGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACg                                                                 <  2:832970/140‑1 (MQ=255)

                                                                 tataGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACg                                                                 <  1:1270594/140‑1 (MQ=255)

                                                                      gtgtTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTa                                                            <  1:1320670/140‑1 (MQ=255)

                                                                         ttGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCa                                                                      <  2:588855/127‑1 (MQ=255)

                                                                         ttGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCa                                                                      >  1:588855/1‑127 (MQ=255)

                                                                         ttGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTActg                                                         >  1:811893/1‑140 (MQ=255)

                                                                         ttGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTActg                                                         >  2:147425/1‑140 (MQ=255)

                                                                         ttGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTActg                                                         >  1:1045490/1‑140 (MQ=255)

                                                                          tGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTActgg                                                        <  2:216520/140‑1 (MQ=255)

                                                                            gTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTActggcc                                                      >  1:1568296/1‑140 (MQ=255)

                                                                            gTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCACGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTActggcc                                                      <  2:1156960/140‑1 (MQ=255)

                                                                                tACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTActggcctggc                                                  >  2:146704/1‑140 (MQ=255)

                                                                                tACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTActggcctggc                                                  >  2:802942/1‑140 (MQ=255)

                                                                                tACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTAc                                                           >  1:1323132/1‑131 (MQ=255)

                                                                                tACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTAc                                                           <  2:1323132/131‑1 (MQ=255)

                                                                                 aCGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCg                                                 <  2:491358/140‑1 (MQ=255)

                                                                                   gcgGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTa                                               <  2:1568296/140‑1 (MQ=255)

                                                                                      gCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCt                                            >  2:1083563/1‑140 (MQ=255)

                                                                                      gCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCt                                            <  1:466188/140‑1 (MQ=255)

                                                                                       cATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCtt                                           >  2:234230/1‑140 (MQ=255)

                                                                                           ggCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGtc                                       >  2:817474/1‑140 (MQ=255)

                                                                                            gCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGtca                                      >  1:542294/1‑140 (MQ=255)

                                                                                                 tGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGTCATCAAt                                 >  2:1505900/1‑140 (MQ=255)

                                                                                                              cACGGCGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGTCATCAATCGCCACCGAACCt                    >  1:167620/1‑140 (MQ=255)

                                                                                                                   cGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGTCATCAATCGCCACCGAACCTCGGCg               <  1:146704/140‑1 (MQ=255)

                                                                                                                   cGACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGTCATCAATCGCCACCGAACCTCGGCg               <  1:802942/140‑1 (MQ=255)

                                                                                                                    gACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGTCATCAATCGCCa                            <  1:116104/126‑1 (MQ=255)

                                                                                                                    gACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGTCATCAATCGCCa                            >  2:116104/1‑126 (MQ=255)

                                                                                                                    gACCGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGTCATCAATCGCCACCGAACCTCGGCGa              >  2:648639/1‑140 (MQ=255)

                                                                                                                      ccGTTGCCAGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTGCGTCATCAATCGCCACCGAACCTCGGCGATc            <  2:811893/140‑1 (MQ=255)

                                                                                                                              aGTCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGTCATCAATCGCCACCGAACCTCGGCGATCGACCATCg    <  1:147425/140‑1 (MQ=255)

                                                                                                                                tCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGTCATCAATCGCCACCGAACCTCGGCGATCGACCATCGTg  <  2:618125/140‑1 (MQ=255)

                                                                                                                                tCGCCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGTCATCAATCGCCACCGAACCTCGGCGATCGACCATCGTg  <  2:76981/140‑1 (MQ=255)

CGGTGCATAGATACCGTACTCAACGGATTCAATAATTTCCTGCGGGGTCGATTTACCCGGCAGCATATAGGTGTTGGTCATACGCGGCATGGGCAGATGGGCGTAGGATTCACGGCGACCGTTGCCAGTCGGCGTCATCCCCATCAAACGCGCGTTGAGTTTATCCTGCATGTAGCCTTTCAGAATGCCGTTCTCAATCAGCACGTTGTACTGGCCTGGCGTACCTTCGTCATCAATCGCCACCGAACCTCGGCGATCGACCATCGTG  >  NC_000913/3390862‑3391129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A