Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F60 I1 R1
|
16 |
97.8 |
3092764 |
99.1% |
3064929 |
137.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,906,701 |
Δ1 bp |
coding (360/810 nt) |
rlmA ← |
23S rRNA m(1)G745 methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,906,701 | 0 | T | . | 99.1%
| 480.7
/ ‑1.8
| 113 | coding (360/810 nt) | rlmA | 23S rRNA m(1)G745 methyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (59/53); total (60/53) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.52e-01 |
Only 100 of 118 total aligned reads displayed.
GCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGC > NC_000913/1906567‑1906835
|
gCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTc > 2:779721/1‑140 (MQ=255)
gCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTc > 2:1471811/1‑140 (MQ=255)
gCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTc > 2:15894/1‑140 (MQ=255)
gCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTc > 2:457424/1‑140 (MQ=255)
gCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTc > 2:657833/1‑140 (MQ=255)
gCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTc > 1:777115/1‑140 (MQ=255)
aaTTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGaa < 1:367713/140‑1 (MQ=255)
aaTTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGaa > 1:1203000/1‑140 (MQ=255)
cttctGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACAt < 1:1471811/140‑1 (MQ=255)
ttctGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATc < 1:1502624/140‑1 (MQ=255)
ctGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCa > 2:723734/1‑140 (MQ=255)
cTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGAc < 2:594064/140‑1 (MQ=255)
ttACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCa < 2:436583/140‑1 (MQ=255)
cgcgTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATc > 1:1233066/1‑125 (MQ=255)
cgcgTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATc > 1:604734/1‑125 (MQ=255)
cgcgTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATc < 2:604734/125‑1 (MQ=255)
cgcgTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATc < 2:1233066/125‑1 (MQ=255)
cgcgTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACgtggt > 2:336819/1‑140 (MQ=255)
cgcgTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACgtggt > 1:4921/1‑140 (MQ=255)
cgcgTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACgtggt > 2:1381875/1‑140 (MQ=255)
cgcgTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACgtggt > 1:523285/1‑140 (MQ=255)
cgcgTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGAGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACgtggt > 2:1011028/1‑140 (MQ=255)
cgTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGa > 2:661249/1‑140 (MQ=255)
aaaTACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGAttt < 1:1327343/140‑1 (MQ=255)
aaaTACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGAttt < 2:22517/140‑1 (MQ=255)
aaaTACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGAttt > 2:1127464/1‑140 (MQ=255)
tACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCgg > 1:40787/1‑140 (MQ=255)
aCGTATTATGGCGTCCAAACTGGTAGCGGAAAACGGCAAACGGTG‑‑‑ACTGGAAGCGACCCAAAAAGTGACCTGCGGATAGCTTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCggt < 2:531159/140‑2 (MQ=255)
tattatGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCaa < 2:248132/140‑1 (MQ=255)
attatGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAAc > 2:1284150/1‑140 (MQ=255)
tatGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGc > 1:722517/1‑140 (MQ=255)
tatGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGc < 1:938079/140‑1 (MQ=255)
tatGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGc > 1:513467/1‑140 (MQ=255)
tatGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGc < 2:298344/140‑1 (MQ=255)
tGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTGGCTGCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACg > 1:997914/1‑140 (MQ=255)
tGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCAt < 1:661249/140‑1 (MQ=255)
tGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCAt > 2:1026073/1‑140 (MQ=255)
tGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCAt < 2:777115/140‑1 (MQ=255)
gCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCg > 2:1137779/1‑140 (MQ=255)
cGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCgg > 2:603671/1‑140 (MQ=255)
gTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGc > 1:1326195/1‑140 (MQ=255)
tCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGc > 2:12775/1‑140 (MQ=255)
tCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCa > 2:1439951/1‑140 (MQ=255)
tCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCa > 2:1283624/1‑140 (MQ=255)
tCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCa > 2:66520/1‑140 (MQ=255)
tCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCa > 2:683801/1‑140 (MQ=255)
tCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCa > 1:103284/1‑140 (MQ=255)
tCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCa > 1:735495/1‑140 (MQ=255)
tACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGTCCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATg < 1:336819/140‑1 (MQ=255)
tACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATg < 2:354866/140‑1 (MQ=255)
tACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATg < 1:779721/140‑1 (MQ=255)
tACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATg < 2:722517/140‑1 (MQ=255)
tACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATg < 1:457424/140‑1 (MQ=255)
tACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATg < 2:735495/140‑1 (MQ=255)
aCTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGc < 2:103284/140‑1 (MQ=255)
aCTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGc < 1:657833/140‑1 (MQ=255)
tGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgt < 1:809322/140‑1 (MQ=255)
tGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgt < 1:509891/140‑1 (MQ=255)
tGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgt < 1:723734/140‑1 (MQ=255)
tGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgt < 1:228421/140‑1 (MQ=255)
tGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgt < 2:1326195/140‑1 (MQ=255)
tGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgt < 1:15894/140‑1 (MQ=255)
tGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGAGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgt < 1:1011028/140‑1 (MQ=255)
ggTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgtg < 1:942961/140‑1 (MQ=255)
gTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgtgt < 1:654995/140‑1 (MQ=255)
gTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgtgt < 1:1381875/140‑1 (MQ=255)
gTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgtgt < 1:1127464/140‑1 (MQ=255)
gTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgtgt < 1:603671/140‑1 (MQ=255)
gTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgtgt < 2:708826/140‑1 (MQ=255)
tCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgtgtgtg > 1:1136385/1‑140 (MQ=255)
tCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgtgtgtg > 2:949915/1‑140 (MQ=255)
tCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCgtgt < 2:746332/137‑1 (MQ=255)
ggAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTa < 2:4921/140‑1 (MQ=255)
gAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTaa > 2:1500969/1‑140 (MQ=255)
gAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTaa < 1:214945/140‑1 (MQ=255)
cGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTaa < 1:349258/135‑1 (MQ=255)
cGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTaa > 2:349258/1‑135 (MQ=255)
tG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTa > 1:623858/1‑124 (MQ=255)
tG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTa < 2:623858/124‑1 (MQ=255)
gCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGcc > 1:128559/1‑140 (MQ=255)
aGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATc > 1:427833/1‑140 (MQ=255)
gCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATcc < 1:753472/140‑1 (MQ=255)
acacAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGc > 1:817738/1‑140 (MQ=255)
cacaAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTcaccac > 1:849880/1‑125 (MQ=255)
cacaAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTcaccac > 1:710668/1‑125 (MQ=255)
cacaAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTcaccac < 2:849880/125‑1 (MQ=255)
cacaAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCa < 1:872360/140‑1 (MQ=255)
aaaGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCAccgcc < 2:128559/140‑1 (MQ=255)
aaaGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCAccgcc > 2:44880/1‑140 (MQ=255)
aaaGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCAccgcc < 1:377721/140‑1 (MQ=255)
aCCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGcc > 2:857626/1‑140 (MQ=255)
aCCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGcc > 1:1298740/1‑140 (MQ=255)
ccTGCGGATAGCGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCt < 2:427833/140‑1 (MQ=255)
cGTTTCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGc > 2:883969/1‑140 (MQ=255)
ttCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATCCCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGt < 2:523285/140‑1 (MQ=255)
ttCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGt > 1:922093/1‑140 (MQ=255)
ttCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGt < 1:949915/140‑1 (MQ=255)
ttCGCCGCCGCTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGt > 2:981297/1‑140 (MQ=255)
ccgcTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCa > 1:1329703/1‑140 (MQ=255)
ccgcTTTTATCGC‑ACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCa > 1:693776/1‑140 (MQ=255)
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GCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG‑‑‑GCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGC > NC_000913/1906567‑1906835
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
