Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 136 55.1 1935284 95.6% 1850131 138.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,740,847 T→C T102A (ACT→GCT)  aroF ← 3‑deoxy‑7‑phosphoheptulonate synthase, Tyr‑sensitive

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,740,8470TC100.0% 254.6 / NA 71T102A (ACT→GCT) aroF3‑deoxy‑7‑phosphoheptulonate synthase, Tyr‑sensitive
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (38/33);  total (38/33)

TCTAACGCTTCCGTCGCCAGTGGCAGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGTGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACAAGGACCAC  >  NC_000913/2740711‑2740975
                                                                                                                                        |                                                                                                                                
tCTAACGCTTCCGTCGCCAGTGGCAGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGt                                                                                                                               >  2:700252/1‑140 (MQ=255)
    aCGCTTCCGTCGCCAGTGGCAGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACgg                                                                                                                           >  2:889956/1‑140 (MQ=255)
    aCGCTTCCGTCGCCAGTGGCAGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACgg                                                                                                                           >  2:331775/1‑140 (MQ=255)
    aCGCTTCCGTCGCCAGTGGCAGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACgg                                                                                                                           >  1:554301/1‑140 (MQ=255)
    aCGCTTCCGTCGCCAGTGGCAGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACgg                                                                                                                           >  1:553908/1‑140 (MQ=255)
      gCTTCCGTCGCCAGTGGCAGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACgggg                                                                                                                         <  1:746618/140‑1 (MQ=255)
                    tGGCAGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGa                                                                                                           <  2:360807/140‑1 (MQ=255)
                    tGGCAGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGa                                                                                                           >  1:360807/1‑140 (MQ=255)
                        aGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGAcgcg                                                                                                       <  2:743050/140‑1 (MQ=255)
                        aGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGAcgcg                                                                                                       <  1:217553/140‑1 (MQ=255)
                        aGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGAcgcg                                                                                                       <  2:554301/140‑1 (MQ=255)
                        aGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGAcgcg                                                                                                       <  2:553908/140‑1 (MQ=255)
                        aGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGAcgcg                                                                                                       <  1:700252/140‑1 (MQ=255)
                         gTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGAcg                                                                                                         <  1:102915/137‑1 (MQ=255)
                         gTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGAcg                                                                                                         >  2:102915/1‑137 (MQ=255)
                          tCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCa                                                                                                     <  1:889956/140‑1 (MQ=255)
                              atatTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTAc                                                                                                 <  1:761630/140‑1 (MQ=255)
                              atatTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTAc                                                                                                 <  1:346054/140‑1 (MQ=255)
                                     ccAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTAc                                                                                                 >  2:943027/1‑133 (MQ=255)
                                     ccAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTAc                                                                                                 <  1:943027/133‑1 (MQ=255)
                                                agcaATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCt                                                                               <  2:532520/140‑1 (MQ=255)
                                                            gcgATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGc                                                                   <  1:31562/140‑1 (MQ=255)
                                                               aTCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAg                                                                >  2:394005/1‑140 (MQ=255)
                                                               aTCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAAGCTATCGCTGACCTCTGCGGCAAg                                                                >  2:749296/1‑140 (MQ=255)
                                                                        ccGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTaaa                                                       >  2:739016/1‑140 (MQ=255)
                                                                            cTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATcga                                                   >  1:800436/1‑140 (MQ=255)
                                                                                 aCATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGc                                              >  1:576939/1‑140 (MQ=255)
                                                                                  cATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCa                                             <  2:576939/140‑1 (MQ=255)
                                                                                  cATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCAGCAAGGGCTTTAAATCGACGAGCa                                             <  2:522525/140‑1 (MQ=255)
                                                                                     cAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCatat                                          >  1:43396/1‑140 (MQ=255)
                                                                                        aaGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTcc                                       >  2:588047/1‑140 (MQ=255)
                                                                                        aaGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTcc                                       >  2:224896/1‑140 (MQ=255)
                                                                                         agagCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATcgac                                                  <  2:560932/128‑1 (MQ=255)
                                                                                         agagCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATcgac                                                  >  1:560932/1‑128 (MQ=255)
                                                                                         agagCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCa                                      >  1:451522/1‑140 (MQ=255)
                                                                                            gCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCagag                                   <  1:588047/140‑1 (MQ=255)
                                                                                            gCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCa                                      <  1:862397/137‑1 (MQ=255)
                                                                                            gCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCa                                      >  2:862397/1‑137 (MQ=255)
                                                                                             ccatccatATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGc                                  >  2:965817/1‑140 (MQ=255)
                                                                                               atccatATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAg                                >  1:333020/1‑140 (MQ=255)
                                                                                                tccatATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGt                               >  2:855630/1‑140 (MQ=255)
                                                                                                        gggATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGAt                       >  1:33028/1‑140 (MQ=255)
                                                                                                          gATCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCa                     >  1:201543/1‑140 (MQ=255)
                                                                                                           aTCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCAt                    >  1:355008/1‑140 (MQ=255)
                                                                                                           aTCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCAt                    >  1:459372/1‑140 (MQ=255)
                                                                                                           aTCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCAt                    >  1:101420/1‑140 (MQ=255)
                                                                                                           aTCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCAt                    >  1:591278/1‑140 (MQ=255)
                                                                                                           aTCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCAt                    >  1:646610/1‑140 (MQ=255)
                                                                                                           aTCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCAt                    <  2:201543/140‑1 (MQ=255)
                                                                                                            tCGTTAATTAACCCTTTCCAGCCGACAGCGGTACGGGGCTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGCTCAtt                   >  1:397361/1‑139 (MQ=255)
                                                                                                              gTTAATTAACCCTTTCCAGCCTACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGATGCTATCGCTGTCCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGaa                 <  1:749296/140‑1 (MQ=255)
                                                                                                               ttaattaaCCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAAt                >  1:582324/1‑140 (MQ=255)
                                                                                                               ttaattaaCCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAAt                <  2:800436/140‑1 (MQ=255)
                                                                                                               ttaattaaCCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAAt                >  2:131920/1‑140 (MQ=255)
                                                                                                                taattaaCCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATg               <  1:331775/140‑1 (MQ=255)
                                                                                                                    taaCCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAAc           <  2:451522/140‑1 (MQ=255)
                                                                                                                    taaCCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAAc           <  2:355008/140‑1 (MQ=255)
                                                                                                                      aCCCTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACaa         <  2:43396/140‑1 (MQ=255)
                                                                                                                       cccTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACAAg        <  2:33028/140‑1 (MQ=255)
                                                                                                                         cTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACAAGGa      <  2:591278/140‑1 (MQ=255)
                                                                                                                         cTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACAAGGa      <  1:855630/140‑1 (MQ=255)
                                                                                                                         cTTTCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACAAGGa      <  2:459372/140‑1 (MQ=255)
                                                                                                                          tttCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACAAGGAc     >  2:252699/1‑140 (MQ=255)
                                                                                                                           ttCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACAAGGAcc    >  1:356866/1‑140 (MQ=255)
                                                                                                                            tCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGaa                 >  1:400491/1‑126 (MQ=255)
                                                                                                                            tCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGaa                 <  2:245174/126‑1 (MQ=255)
                                                                                                                            tCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGaa                 >  1:245174/1‑126 (MQ=255)
                                                                                                                            tCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGaa                 <  2:400491/126‑1 (MQ=255)
                                                                                                                            tCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACAAGGACca   >  2:591705/1‑140 (MQ=255)
                                                                                                                            tCCAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACAAGGACca   >  1:674174/1‑140 (MQ=255)
                                                                                                                             ccAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACAAGGACcac  <  2:356866/140‑1 (MQ=255)
                                                                                                                             ccAGCCGACAGCGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACAAGGACcac  <  2:646610/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                
TCTAACGCTTCCGTCGCCAGTGGCAGTCCCATATTCACCAGCTCAAGCAGCAATTTACGCGCGATCTGCAGCCCGGCTTCTACATCAAAAGAGCCATCCATATGGGGATCGTTAATTAACCCTTTCCAGCCGACAGTGGTACGGGGTTTTTCAAAATAGACGCGCATTACCAGATAGAGGCTATCGCTGACCTCTGCGGCAAGGGCTTTAAATCGACGAGCATATTCCAGAGCAGTTTCCGGATCATGAATGGAACAAGGACCAC  >  NC_000913/2740711‑2740975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A