Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 136 69.0 2332728 99.3% 2316398 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,710,284 C→T intergenic (‑120/‑136) rseD ← / → nadB rpoE leader peptide/L‑aspartate oxidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,710,2840CT100.0% 264.1 / NA 74intergenic (‑120/‑136)rseD/nadBrpoE leader peptide/L‑aspartate oxidase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (43/31);  total (43/31)

GTAGACGGATCATTATCTATCATTATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGCCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTAGTAAATTAAACAAAGAA  >  NC_000913/2710152‑2710418
                                                                                                                                    |                                                                                                                                      
gTAGACGGATCATTATCTATCATTATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCTACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAAc                                                                                                                                 <  2:596012/140‑1 (MQ=255)
   gACGGATCATTATCTATCATTATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCA‑CAGTCAGTAACTtct                                                                                                                             >  2:953622/1‑140 (MQ=255)
        aTCATTATCTATCATTATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCttt                                                                                                                         >  1:20998/1‑140 (MQ=255)
         tCATTATCTATCATTATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCtttt                                                                                                                        <  1:729005/140‑1 (MQ=255)
           aTTATCTATCATTATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTtc                                                                                                                      >  1:472950/1‑140 (MQ=255)
           aTTATCTATCATTATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTtc                                                                                                                      >  2:845709/1‑140 (MQ=255)
                  atcATTATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTcgccgc                                                                                                               >  1:1106559/1‑140 (MQ=255)
                    cATTATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCtttt                                                                                                                        <  1:35157/129‑1 (MQ=255)
                    cATTATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCtttt                                                                                                                        >  2:35157/1‑129 (MQ=255)
                    cATTATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGccc                                                                                                             >  2:815583/1‑140 (MQ=255)
                         taAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGt                                                                                                        >  1:621281/1‑140 (MQ=255)
                         taAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGt                                                                                                        >  2:485589/1‑140 (MQ=255)
                           aGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCa                                                                                                      >  2:751818/1‑140 (MQ=255)
                           aGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCa                                                                                                      <  1:174373/140‑1 (MQ=255)
                           aGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCa                                                                                                      <  1:489628/140‑1 (MQ=255)
                            gTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAg                                                                                                     <  2:451741/140‑1 (MQ=255)
                              cTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAATAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCg                                                                                                   >  2:614354/1‑140 (MQ=255)
                               tACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTcgccg                                                                                                                >  2:317352/1‑126 (MQ=255)
                               tACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTcgccg                                                                                                                <  1:317352/126‑1 (MQ=255)
                                 cAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCgtgt                                                                                                >  1:721279/1‑140 (MQ=255)
                                     aTCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAg                                                                                            <  2:733828/140‑1 (MQ=255)
                                      tCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGc                                                                                           >  2:927491/1‑140 (MQ=255)
                                       cTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCA‑CAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCaa                                                                                         <  1:953622/140‑1 (MQ=255)
                                              tCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTaa                                                                                   >  1:916250/1‑140 (MQ=255)
                                               cGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAAc                                                                                  >  1:545317/1‑140 (MQ=255)
                                                gCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACa                                                                                 <  2:721279/140‑1 (MQ=255)
                                                      tCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGc                                                                                           >  1:237267/1‑124 (MQ=255)
                                                      tCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGc                                                                                           <  2:237267/124‑1 (MQ=255)
                                                         gtgtAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACa                                                                                 >  2:546520/1‑131 (MQ=255)
                                                         gtgtAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACa                                                                                 <  1:546520/131‑1 (MQ=255)
                                                          tgtAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTaaaa                                                                       >  1:1024224/1‑140 (MQ=255)
                                                           gtAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAAt                                                                      >  1:480613/1‑140 (MQ=255)
                                                            tAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATa                                                                     >  1:157089/1‑140 (MQ=255)
                                                             aGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAg                                                                    <  1:845709/140‑1 (MQ=255)
                                                              gAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGc                                                                   <  1:485589/140‑1 (MQ=255)
                                                                 aTGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAg                                                                    >  2:280460/1‑136 (MQ=255)
                                                                 aTGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAg                                                                    <  1:280460/136‑1 (MQ=255)
                                                                    cccATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGGCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtgt                                                             >  2:1015271/1‑140 (MQ=255)
                                                                    cccATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGc                                                                   >  2:113139/1‑134 (MQ=255)
                                                                    cccATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGc                                                                   <  1:113139/134‑1 (MQ=255)
                                                                    cccATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtgt                                                             >  2:495724/1‑140 (MQ=255)
                                                                    cccATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtgt                                                             >  2:1123521/1‑140 (MQ=255)
                                                                    cccATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtgt                                                             >  1:1082213/1‑140 (MQ=255)
                                                                    cccATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtgt                                                             >  1:190115/1‑140 (MQ=255)
                                                                    cccATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtgt                                                             >  1:746643/1‑140 (MQ=255)
                                                                    cccATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGgtgt                                                             >  1:191549/1‑140 (MQ=255)
                                                                      cATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGttt                                                           >  2:672012/1‑140 (MQ=255)
                                                                             cTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGca                                                    <  1:672012/140‑1 (MQ=255)
                                                                                  tGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCacaaca                                               <  2:6629/140‑1 (MQ=255)
                                                                                           aCCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGatgctat                                      >  1:825752/1‑140 (MQ=255)
                                                                                            cccAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGatgctatg                                     <  2:282250/140‑1 (MQ=255)
                                                                                              cAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCacaaca                                               <  1:650189/128‑1 (MQ=255)
                                                                                              cAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCacaaca                                               >  2:650189/1‑128 (MQ=255)
                                                                                                aCGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGa                                 <  1:489411/140‑1 (MQ=255)
                                                                                                aCGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGa                                 <  1:400289/140‑1 (MQ=255)
                                                                                                 cGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGAc                                >  1:414657/1‑140 (MQ=255)
                                                                                                 cGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGAc                                >  1:384052/1‑140 (MQ=255)
                                                                                                 cGGCCTTTTTATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGAc                                >  1:247959/1‑140 (MQ=255)
                                                                                                       ttttATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGGACAACATGATGCTATGCTGACCAAAcc                          >  1:143974/1‑140 (MQ=255)
                                                                                                       ttttATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAAcc                          <  1:1139468/140‑1 (MQ=255)
                                                                                                       ttttATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAAcc                          <  1:495724/140‑1 (MQ=255)
                                                                                                       ttttATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAAcc                          <  2:20998/140‑1 (MQ=255)
                                                                                                        tttATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCa                         <  2:314132/140‑1 (MQ=255)
                                                                                                         ttATTTCACCACCTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCAt                        <  2:157089/140‑1 (MQ=255)
                                                                                                                accaccTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTAGt                 >  1:917013/1‑140 (MQ=255)
                                                                                                                  caccTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTa                   >  2:375244/1‑136 (MQ=255)
                                                                                                                  caccTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTa                   <  1:375244/136‑1 (MQ=255)
                                                                                                                  caccTAATCCTCCACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTAGTaa               >  2:892420/1‑140 (MQ=255)
                                                                                                                         tcctccACCAGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTAGTAAATTAAAc        >  1:652085/1‑140 (MQ=255)
                                                                                                                              caccaGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTAGTAAATTAAACAAAGa   >  1:608525/1‑140 (MQ=255)
                                                                                                                              caccaGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTAGTAAATTAAACAAAGa   >  2:297836/1‑140 (MQ=255)
                                                                                                                               accaGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTAGTAAATTAAACAAAGaa  <  2:472950/140‑1 (MQ=255)
                                                                                                                               accaGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTAGTAAATTAAACAAAGaa  <  2:191549/140‑1 (MQ=255)
                                                                                                                               accaGTCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTAGTAAATTAAACAAAGaa  <  1:1123521/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                      
GTAGACGGATCATTATCTATCATTATAAGTCTACAGAATCTGAACATCGCATTATCTGTGTAGAAATGCCCATTTAACTGCCTGAAGAGTAACCCAACGGCCTTTTTATTTCACCACCTAATCCTCCACCAGCCAGTAACTTCTCTTTTTCTCGCCGCCCTGCGTCAGCGTGTTTAGCAACTGTAACAAATATTAAAATAGCAGGTGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTAGTAAATTAAACAAAGAA  >  NC_000913/2710152‑2710418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A