Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F30 I1 R1	25	134.5	4568722	99.0%	4523034	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	540,963	G→T	S133S (TCG→TCT)	ybbY →	putative purine transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	540,963	0	G	T	100.0%	396.3 / NA	111	S133S (TCG→TCT)	ybbY	putative purine transporter
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (54/57); total (54/57)

Only 100 of 113 total aligned reads displayed.

GGTGAAGCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCTCGGTGGCG  >  NC_000913/540826‑541098

ggTGAAGCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGt                                                                                                                                       >  1:1055647/1‑140 (MQ=255)

ggTGAAGCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGt                                                                                                                                       >  1:1150622/1‑140 (MQ=255)

ggTGAAGCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGt                                                                                                                                       >  1:228996/1‑140 (MQ=255)

ggTGAAGCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGt                                                                                                                                       >  2:639164/1‑140 (MQ=255)

 gTGAAGCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCtgtg                                                                                                                                      <  1:1980639/140‑1 (MQ=255)

  tGAAGCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGa                                                                                                                                     <  2:783327/140‑1 (MQ=255)

    aaGCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTATGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATg                                                                                                                                   >  1:1337280/1‑140 (MQ=255)

      gCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGt                                                                                                                                 <  2:1055647/140‑1 (MQ=255)

      gCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGt                                                                                                                                 >  2:813028/1‑140 (MQ=255)

      gCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGt                                                                                                                                 <  1:1913138/140‑1 (MQ=255)

      gCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGt                                                                                                                                 <  1:199165/140‑1 (MQ=255)

      gCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGt                                                                                                                                 >  1:1188677/1‑140 (MQ=255)

      gCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGt                                                                                                                                 <  1:40910/140‑1 (MQ=255)

      gCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGt                                                                                                                                 <  1:121018/140‑1 (MQ=255)

      gCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGt                                                                                                                                 >  1:1280831/1‑140 (MQ=255)

      gCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGt                                                                                                                                 <  2:2133188/140‑1 (MQ=255)

       cATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTc                                                                                                                                <  1:1448452/140‑1 (MQ=255)

       cATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTc                                                                                                                                <  2:1150622/140‑1 (MQ=255)

       cATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTc                                                                                                                                <  1:798061/140‑1 (MQ=255)

       cATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTc                                                                                                                                <  2:1788219/140‑1 (MQ=255)

        aTCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCt                                                                                                                               >  1:1565342/1‑140 (MQ=255)

           gcgcgGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGt                                                                                                                            <  1:517421/140‑1 (MQ=255)

            cgcgGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGtt                                                                                                                           <  2:1091901/140‑1 (MQ=255)

            cgcgGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGtt                                                                                                                           >  2:1281430/1‑140 (MQ=255)

                 gACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGt                                                                                                                      >  1:717842/1‑140 (MQ=255)

                     ccGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGAt                                                                                                                  <  1:1074718/140‑1 (MQ=255)

                        aTCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTATGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCt                                                                                                               <  2:1337280/140‑1 (MQ=255)

                        aTCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTc                                                                                                                                >  2:451357/1‑123 (MQ=255)

                        aTCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTc                                                                                                                                <  1:451357/123‑1 (MQ=255)

                            aCGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGgc                                                                                                           <  2:228996/140‑1 (MQ=255)

                             cGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGgcg                                                                                                          <  1:292460/140‑1 (MQ=255)

                             cGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGgcg                                                                                                          <  1:1281430/140‑1 (MQ=255)

                               atatCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGgcgcg                                                                                                        <  2:717842/140‑1 (MQ=255)

                               atatCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGgcgcg                                                                                                        <  2:440114/140‑1 (MQ=255)

                               atatCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGgcgcg                                                                                                        <  2:1926986/140‑1 (MQ=255)

                                  tCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAg                                                                                                     >  1:485942/1‑140 (MQ=255)

                                  tCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAg                                                                                                     >  1:1557005/1‑140 (MQ=255)

                                  tCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAg                                                                                                     >  1:716244/1‑140 (MQ=255)

                                   cGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGc                                                                                                    <  2:1004565/140‑1 (MQ=255)

                                   cGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGc                                                                                                    >  2:408136/1‑140 (MQ=255)

                                    gCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCt                                                                                                   <  1:126197/140‑1 (MQ=255)

                                      caccaGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTGGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGa                                                                                                 <  1:1347288/140‑1 (MQ=255)

                                       accaGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGAc                                                                                                <  1:1020584/140‑1 (MQ=255)

                                       accaGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGAc                                                                                                >  2:1020584/1‑140 (MQ=255)

                                        ccaGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGgcg                                                                                                          >  2:638806/1‑129 (MQ=255)

                                        ccaGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGAcc                                                                                               <  2:1652451/140‑1 (MQ=255)

                                            ccTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTa                                                                                           >  2:1433295/1‑140 (MQ=255)

                                            ccTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTa                                                                                           >  1:1941435/1‑140 (MQ=255)

                                             cTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGgcg                                                                                                          >  2:1649299/1‑124 (MQ=255)

                                             cTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGgcg                                                                                                          <  1:1649299/124‑1 (MQ=255)

                                              tGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATc                                                                                         <  2:1188677/140‑1 (MQ=255)

                                              tGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATc                                                                                         <  1:1956872/140‑1 (MQ=255)

                                              tGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATc                                                                                         <  2:448204/140‑1 (MQ=255)

                                                     ggggATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCa                                                                                  <  2:1280831/140‑1 (MQ=255)

                                                      gggATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCttttt                                                                                    >  1:1995702/1‑137 (MQ=255)

                                                      gggATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCttttt                                                                                    <  2:1995702/137‑1 (MQ=255)

                                                      gggATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCaa                                                                                 >  1:2282070/1‑140 (MQ=255)

                                                               ctctCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCt                                                                        <  1:821021/140‑1 (MQ=255)

                                                                  tcCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTc                                                                                   <  1:1350905/126‑1 (MQ=255)

                                                                  tcCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTc                                                                                   >  2:1350905/1‑126 (MQ=255)

                                                                   ccGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCggg                                                                    >  2:1841333/1‑140 (MQ=255)

                                                                    cGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGc                                                                   <  1:453735/140‑1 (MQ=255)

                                                                     ggCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCt                                                                  >  1:378544/1‑140 (MQ=255)

                                                                      gCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTg                                                                 <  2:1217384/140‑1 (MQ=255)

                                                                      gCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTg                                                                 <  2:1941435/140‑1 (MQ=255)

                                                                          gCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGt                                                             >  1:1993816/1‑140 (MQ=255)

                                                                          gCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGt                                                             <  1:1824041/140‑1 (MQ=255)

                                                                           cTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGtt                                                            >  1:1047547/1‑140 (MQ=255)

                                                                           cTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGtt                                                            <  2:1047547/140‑1 (MQ=255)

                                                                                gATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCa                                                       <  1:1983496/140‑1 (MQ=255)

                                                                                        ttGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGAc                                               >  2:660211/1‑140 (MQ=255)

                                                                                            ttttAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGa                                           >  1:845244/1‑140 (MQ=255)

                                                                                              ttAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCCGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAAt                                         >  2:2274572/1‑140 (MQ=255)

                                                                                                aGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAAttt                                       >  2:1623033/1‑140 (MQ=255)

                                                                                                aGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAAttt                                       >  1:1860456/1‑140 (MQ=255)

                                                                                                  cGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTa                                     <  2:1860456/140‑1 (MQ=255)

                                                                                                              tCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAAt                                 >  1:1717900/1‑132 (MQ=255)

                                                                                                              tCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAAt                                 <  2:1717900/132‑1 (MQ=255)

                                                                                                              tCGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTAc                         >  1:2266635/1‑140 (MQ=255)

                                                                                                               cGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTAcc                        >  1:1658120/1‑140 (MQ=255)

                                                                                                               cGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTAcc                        >  1:1202698/1‑140 (MQ=255)

                                                                                                               cGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTAcc                        >  2:1428621/1‑140 (MQ=255)

                                                                                                               cGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTAc                         <  2:53799/139‑1 (MQ=255)

                                                                                                               cGCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTAc                         >  1:53799/1‑139 (MQ=255)

                                                                                                                gCCTGGCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTAccg                       <  1:660211/140‑1 (MQ=255)

                                                                                                                    ggCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTaaaa                                  <  2:1556132/125‑1 (MQ=255)

                                                                                                                     gCACGGTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGtt                  <  1:639164/140‑1 (MQ=255)

                                                                                                                          gTTATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCgcgc             >  1:21989/1‑140 (MQ=255)

                                                                                                                           ttATTTACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGct            >  1:349479/1‑140 (MQ=255)

                                                                                                                              tttACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCtctc         <  2:21989/140‑1 (MQ=255)

                                                                                                                               ttACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCTCg        >  1:1304761/1‑140 (MQ=255)

                                                                                                                               ttACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCTCg        <  2:160150/140‑1 (MQ=255)

                                                                                                                               ttACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCTCg        <  2:1438763/140‑1 (MQ=255)

                                                                                                                                tACGCCGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGTATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCTCgg       >  2:254535/1‑140 (MQ=255)

                                                                                                                                    ccGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGct            <  1:2255019/131‑1 (MQ=255)

                                                                                                                                    ccGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGct            >  2:2255019/1‑131 (MQ=255)

                                                                                                                                     cGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCTCGGTGGCg  >  1:491407/1‑140 (MQ=255)

                                                                                                                                     cGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCTCGGTGGCg  >  1:476479/1‑140 (MQ=255)

                                                                                                                                     cGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCTCGGTGGCg  >  2:1662815/1‑140 (MQ=255)

                                                                                                                                     cGTCTGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCTCGGTGGCg  >  2:788637/1‑140 (MQ=255)

GGTGAAGCATCGCGCGGGACACCGATCAACGATATCGCCACCAGCCTGGCAGTGGGGATTGCACTCTCCGGCGTGCTGACGATGTTGATTGGTTTTAGCGGATTAGGCCATCGCCTGGCACGGTTATTTACGCCGTCGGTGATGGTCTTGTTTATGTTGATGCTGGGCGCGCAGCTGACCACTATCTTTTTCAAAGGTATGCTCGGGCTGCCGTTTGGCATAGCCGACCCGAATTTTAAAATTCAGTTACCGCCGTTCGCGCTCTCGGTGGCG  >  NC_000913/540826‑541098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A