Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A30 F30 I1 R1	22	78.9	2706124	99.2%	2684475	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	677,964	G→T	D184Y (GAT→TAT)	djlB →	putative chaperone

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	677,964	0	G	T	100.0%	303.5 / NA	85	D184Y (GAT→TAT)	djlB	putative chaperone
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (38/47); total (38/47)

GTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCGATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAGG  >  NC_000913/677831‑678100

gtTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTAttttt                                                                                                                                    >  2:168304/1‑140 (MQ=255)

 ttACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTa                                                                                                                                   >  2:153833/1‑140 (MQ=255)

 ttACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTa                                                                                                                                   >  1:900615/1‑140 (MQ=255)

  tACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTAc                                                                                                                                  <  2:328690/140‑1 (MQ=255)

        aggaAAATACCGGGGAAATAGACGAAGAAGAACTGGAACCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATg                                                                                                                            >  2:1285406/1‑140 (MQ=255)

          gaAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGtt                                                                                                                          >  1:288328/1‑140 (MQ=255)

              aTACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCt                                                                                                                      <  1:23555/140‑1 (MQ=255)

              aTACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCt                                                                                                                      <  2:375875/140‑1 (MQ=255)

                 ccGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCgg                                                                                                                   >  1:85247/1‑140 (MQ=255)

                 ccGGGGAAATAGACGAAGAAGAACTGGAATCCTATTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCgg                                                                                                                   >  1:736566/1‑140 (MQ=255)

                  cGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGa                                                                                                                  >  2:563424/1‑140 (MQ=255)

                    gggAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGAtt                                                                                                                >  2:1184061/1‑140 (MQ=255)

                       aaaTAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTgg                                                                                                             >  2:1219350/1‑140 (MQ=255)

                         aTAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTc                                                                                                           >  1:1157498/1‑140 (MQ=255)

                         aTAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTc                                                                                                           >  2:1135484/1‑140 (MQ=255)

                           aGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCAt                                                                                                         <  2:288328/140‑1 (MQ=255)

                           aGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCAt                                                                                                         <  2:1022477/140‑1 (MQ=255)

                           aGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCAt                                                                                                         <  2:1162068/140‑1 (MQ=255)

                           aGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCAt                                                                                                         <  1:563424/140‑1 (MQ=255)

                           aGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCAt                                                                                                         <  2:1305917/140‑1 (MQ=255)

                               gaagaagaaCTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCa                                                                                                     >  1:249120/1‑140 (MQ=255)

                                 agaagaaCTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATc                                                                                                   <  1:1135484/140‑1 (MQ=255)

                                     gaaCTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCcaca                                                                                               <  2:900615/140‑1 (MQ=255)

                                          ggAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGc                                                                                          <  2:354262/140‑1 (MQ=255)

                                          ggAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGc                                                                                          <  2:1157498/140‑1 (MQ=255)

                                          ggAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGc                                                                                          <  2:249120/140‑1 (MQ=255)

                                           gAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCt                                                                                         >  1:428060/1‑140 (MQ=255)

                                            aaTCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTg                                                                                        <  1:78246/140‑1 (MQ=255)

                                            aaTCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTg                                                                                        <  1:1014339/140‑1 (MQ=255)

                                               ccTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACa                                                                                     <  2:85247/140‑1 (MQ=255)

                                               ccTATTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACa                                                                                     <  2:736566/140‑1 (MQ=255)

                                                     tataTGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTAt                                                                               >  2:1014401/1‑140 (MQ=255)

                                                          gCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAgc                                                                          >  1:490698/1‑140 (MQ=255)

                                                          gCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAgc                                                                          >  2:600843/1‑140 (MQ=255)

                                                           ccATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAgcg                                                                         >  1:808121/1‑140 (MQ=255)

                                                             aTTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCa                                                                       <  1:66860/140‑1 (MQ=255)

                                                               tGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAAc                                                                     >  1:841124/1‑140 (MQ=255)

                                                                gCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACa                                                                    <  1:1184061/140‑1 (MQ=255)

                                                                gCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACa                                                                    <  2:1232994/140‑1 (MQ=255)

                                                                 cGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACAt                                                                   <  1:451183/140‑1 (MQ=255)

                                                                   aaGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATcg                                                                 >  2:804610/1‑140 (MQ=255)

                                                                     ggggAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATcgcg                                                               <  1:168304/140‑1 (MQ=255)

                                                                      gggAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCgcgc                                                              >  2:73339/1‑140 (MQ=255)

                                                                      gggAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCgcgc                                                              >  1:447553/1‑140 (MQ=255)

                                                                        gAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAg                                                            <  2:582875/140‑1 (MQ=255)

                                                                          aTGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTg                                                          <  2:819708/140‑1 (MQ=255)

                                                                          aTGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTg                                                          <  1:1014401/140‑1 (MQ=255)

                                                                           tGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGa                                                         <  2:428060/140‑1 (MQ=255)

                                                                                  aaCTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATccc                                                  <  1:73339/140‑1 (MQ=255)

                                                                                  aaCTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATccc                                                  >  1:665532/1‑140 (MQ=255)

                                                                                     ttCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGa                                                         <  2:845005/130‑1 (MQ=255)

                                                                                     ttCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGa                                                         >  1:845005/1‑130 (MQ=255)

                                                                                     ttCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCga                                               <  2:808121/140‑1 (MQ=255)

                                                                                     ttCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCga                                               <  2:549793/140‑1 (MQ=255)

                                                                                       ccAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCgatg                                             >  1:1301964/1‑140 (MQ=255)

                                                                                       ccAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCgatg                                             >  2:364553/1‑140 (MQ=255)

                                                                                          gACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGatgatg                                          <  2:412261/140‑1 (MQ=255)

                                                                                               ttCTGCATCTGCCCGTTGCCGTGCAAAATTACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCaaaa                                     >  1:91105/1‑140 (MQ=255)

                                                                                               ttCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCaaaa                                     <  1:287291/140‑1 (MQ=255)

                                                                                               ttCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCaaaa                                     >  2:287291/1‑140 (MQ=255)

                                                                                                    cATCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGca                                <  1:159747/140‑1 (MQ=255)

                                                                                                     aTCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGcac                               >  2:915199/1‑140 (MQ=255)

                                                                                                      tCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGcaca                              <  1:915199/140‑1 (MQ=255)

                                                                                                      tCTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGcaca                              <  2:1301964/140‑1 (MQ=255)

                                                                                                       cTGCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAg                             >  2:1267417/1‑140 (MQ=255)

                                                                                                         gCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGaa                           >  1:384303/1‑140 (MQ=255)

                                                                                                         gCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGaa                           >  2:431494/1‑140 (MQ=255)

                                                                                                         gCCCGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGaa                           >  1:1270224/1‑140 (MQ=255)

                                                                                                          cccGTTGCCGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGaaa                          >  1:1017583/1‑140 (MQ=255)

                                                                                                                 ccGTGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTc                   <  1:772412/140‑1 (MQ=255)

                                                                                                                    tGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGc                <  2:1017583/140‑1 (MQ=255)

                                                                                                                    tGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGc                >  1:1085457/1‑140 (MQ=255)

                                                                                                                    tGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGc                >  2:131254/1‑140 (MQ=255)

                                                                                                                    tGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGc                <  1:153833/140‑1 (MQ=255)

                                                                                                                    tGCAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGc                <  2:533197/140‑1 (MQ=255)

                                                                                                                      cAAAATGACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTg              >  2:258141/1‑140 (MQ=255)

                                                                                                                            gACACCATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAg        >  1:661584/1‑140 (MQ=255)

                                                                                                                                 cATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAg   <  2:661584/140‑1 (MQ=255)

                                                                                                                                 cATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAg   <  1:258141/140‑1 (MQ=255)

                                                                                                                                 cATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAg   <  2:91105/140‑1 (MQ=255)

                                                                                                                                 cATCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAg   <  1:364553/140‑1 (MQ=255)

                                                                                                                                  aTCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAgg  <  2:665532/140‑1 (MQ=255)

                                                                                                                                  aTCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAgg  <  1:1285406/140‑1 (MQ=255)

                                                                                                                                  aTCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAgg  <  1:804610/140‑1 (MQ=255)

                                                                                                                                  aTCTATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAgg  <  2:841124/140‑1 (MQ=255)

GTTACAGGAGGAAAATACCGGGGAAATAGACGAAGAAGAACTGGAATCCTTTTTATATGCCATTGCGAAGGGGAATGTTTTTAACTTCCAGACCATTCTGCATCTGCCCGTTGCCGTGCAAAATGACACCATCGATTTTTACCAAATGTTCGCTCGGATTTGGTCATCGCATCCACAATGGCTGACATTGTATTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAGG  >  NC_000913/677831‑678100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A