Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F30 I1 R1	17	160.2	5443210	98.9%	5383334	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,390,655	C→A	Q285H (CAG→CAT)	rsgA ←	ribosome small subunit‑dependent GTPase A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,390,655	0	C	A	100.0%	563.7 / NA	159	Q285H (CAG→CAT)	rsgA	ribosome small subunit‑dependent GTPase A
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (81/78); total (81/78)

Only 100 of 161 total aligned reads displayed.

GGTGATAGTTTTCGAAACGGGTTTCCGCGATTTTCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCCTGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGACCGAGCCCCGAGTTGTCA  >  NC_000913/4390519‑4390790

ggTGATAGTTTTCGAAACGGGTTTCCGCGATTTTCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGa                                                                                                                                      <  1:1086100/140‑1 (MQ=255)

ggTGATAGTTTTCGAAACGGGTTTCCGCGATTTTCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGa                                                                                                                                      >  1:865731/1‑140 (MQ=255)

ggTGATAGTTTTCGAAACGGGTTTCCGCGATTTTCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGa                                                                                                                                      >  2:889859/1‑140 (MQ=255)

ggTGATAGTTTTCGAAACGGGTTTCCGCGATTTTCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGa                                                                                                                                      >  2:864500/1‑140 (MQ=255)

  tGATAGTTTTCGAAACGGGTTTCCGCGATTTTCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGt                                                                                                                                    >  2:2674716/1‑140 (MQ=255)

     tAGTTTTCGAAACGGGTTTCCGCGATTTTCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGAt                                                                                                                                 >  2:780357/1‑140 (MQ=255)

     tAGTTTTCGAAACGGGTTTCCGCGATTTTCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGAt                                                                                                                                 <  1:1325785/140‑1 (MQ=255)

          ttCGAAACGGGTTTCCGCGATTTTCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGtt                                                                                                                            >  1:361126/1‑140 (MQ=255)

                  gggTTTCCGCGATTTTCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTcc                                                                                                                    <  2:865731/140‑1 (MQ=255)

                    gTTTCCGCGATTTTCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAg                                                                                                                  >  2:434791/1‑140 (MQ=255)

                              ttttCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAgg                                                                                                        >  1:1685717/1‑140 (MQ=255)

                               tttCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGc                                                                                                       <  2:309607/140‑1 (MQ=255)

                                    cTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAAc                                                                                                  <  2:1328797/140‑1 (MQ=255)

                                     ttCCTCAACCGCTTGCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACt                                                                                                 <  1:298853/140‑1 (MQ=255)

                                       ccTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCa                                                                                               >  1:481098/1‑140 (MQ=255)

                                        cTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCAc                                                                                              >  1:2100526/1‑140 (MQ=255)

                                        cTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCAc                                                                                              >  2:260319/1‑140 (MQ=255)

                                        cTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCAc                                                                                              >  2:1053312/1‑140 (MQ=255)

                                        cTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGCTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGGATTCGCCAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCAc                                                                                              >  2:1622083/1‑140 (MQ=255)

                                         tCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACg                                                                                             <  1:260319/140‑1 (MQ=255)

                                         tCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACg                                                                                             <  2:1753335/140‑1 (MQ=255)

                                         tCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACg                                                                                             <  1:2374460/140‑1 (MQ=255)

                                         tCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACg                                                                                             <  2:481098/140‑1 (MQ=255)

                                         tCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACg                                                                                             <  1:2199413/140‑1 (MQ=255)

                                         tCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACg                                                                                             <  2:169871/140‑1 (MQ=255)

                                         tCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACg                                                                                             <  1:1323316/140‑1 (MQ=255)

                                         tCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACg                                                                                             <  1:1041759/140‑1 (MQ=255)

                                         tCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACg                                                                                             <  1:1489468/140‑1 (MQ=255)

                                         ccAACCCGTTCCCGGATAGGGCAACCCCGATCGGTATCGGGTTTGCAATCGGCGTAATTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACg                                                                                             <  1:2524300/139‑1 (MQ=255)

                                          cAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACg                                                                                             >  2:1618067/1‑139 (MQ=255)

                                           aaCCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCa                                                                                           <  1:1543188/140‑1 (MQ=255)

                                               gCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTc                                                                                        <  2:2490420/139‑1 (MQ=255)

                                               gCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTc                                                                                        >  1:2490420/1‑139 (MQ=255)

                                                   cccGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTggg                                                                                   <  2:126726/140‑1 (MQ=255)

                                                    ccGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTgggg                                                                                  <  1:874567/140‑1 (MQ=255)

                                                      ggATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAg                                                                                <  1:1058954/140‑1 (MQ=255)

                                                           gcgcAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAat                                                                           >  1:1608235/1‑140 (MQ=255)

                                                           gcgcAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAat                                                                           <  2:2100526/140‑1 (MQ=255)

                                                            cgcAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAatc                                                                          >  1:892797/1‑140 (MQ=255)

                                                            cgcAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAat                                                                           <  1:396156/139‑1 (MQ=255)

                                                                 cccGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTg                                                                                     >  1:163788/1‑124 (MQ=255)

                                                                 cccGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTg                                                                                     <  2:163788/124‑1 (MQ=255)

                                                                          gTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTg                                                            <  1:1871939/140‑1 (MQ=255)

                                                                           tATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGc                                                           >  2:1850281/1‑140 (MQ=255)

                                                                           tATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGc                                                           >  1:861560/1‑140 (MQ=255)

                                                                           tATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGc                                                           >  1:840972/1‑140 (MQ=255)

                                                                           tATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGc                                                           >  1:1534187/1‑140 (MQ=255)

                                                                           tATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGc                                                           >  1:1249712/1‑140 (MQ=255)

                                                                            aTCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCg                                                          <  2:1542903/140‑1 (MQ=255)

                                                                            aTCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCg                                                          <  2:821026/140‑1 (MQ=255)

                                                                                tgtTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGaa                                                      >  2:465891/1‑140 (MQ=255)

                                                                                tgtTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGaa                                                      >  1:1111173/1‑140 (MQ=255)

                                                                                tgtTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGaa                                                      >  2:2303532/1‑140 (MQ=255)

                                                                                tgtTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGaa                                                      >  2:124809/1‑140 (MQ=255)

                                                                                  tttGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGTTTTGTTCCGGCTCCAGGCGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGt                                                    >  2:1203335/1‑140 (MQ=255)

                                                                                    tGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGa                                                  >  1:1788091/1‑140 (MQ=255)

                                                                                     gCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGa                                                       <  2:584622/134‑1 (MQ=255)

                                                                                     gCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGa                                                       >  1:584622/1‑134 (MQ=255)

                                                                                     gCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGAt                                                 >  2:1325006/1‑140 (MQ=255)

                                                                                     gCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGAt                                                 >  2:876308/1‑140 (MQ=255)

                                                                                     gCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGAt                                                 >  2:2392684/1‑140 (MQ=255)

                                                                                            cgATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCg                                          <  1:780357/140‑1 (MQ=255)

                                                                                              atatTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAg                                        >  1:2403439/1‑140 (MQ=255)

                                                                                               tatTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAgc                                       <  1:901503/140‑1 (MQ=255)

                                                                                                 tttACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAgcgg                                     <  2:1804727/140‑1 (MQ=255)

                                                                                                 tttACACAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAgcgg                                     <  1:465891/140‑1 (MQ=255)

                                                                                                    acacAGACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGcggcgg                                  <  2:892797/140‑1 (MQ=255)

                                                                                                         gACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAGGTGATACAGCCGAGCGGCGGTCgtg                             >  1:1178075/1‑140 (MQ=255)

                                                                                                         gACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGcggcgg                                  >  2:922825/1‑135 (MQ=255)

                                                                                                         gACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCgtg                             <  2:1017639/140‑1 (MQ=255)

                                                                                                         gACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCgtg                             >  2:2141586/1‑140 (MQ=255)

                                                                                                         gACCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCgtg                             >  2:759683/1‑140 (MQ=255)

                                                                                                          aCCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAgcgg                                     >  1:2309241/1‑131 (MQ=255)

                                                                                                          aCCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGcggcgg                                  <  1:2435167/134‑1 (MQ=255)

                                                                                                          aCCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGcggcgg                                  >  2:2435167/1‑134 (MQ=255)

                                                                                                          aCCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCgtgg                            >  1:1276454/1‑140 (MQ=255)

                                                                                                          aCCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCgtgg                            >  2:194971/1‑140 (MQ=255)

                                                                                                          aCCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCgtgg                            <  1:1325006/140‑1 (MQ=255)

                                                                                                          aCCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCgtgg                            >  1:979946/1‑140 (MQ=255)

                                                                                                          aCCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCgtgg                            >  1:2552336/1‑140 (MQ=255)

                                                                                                          aCCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCgtgg                            >  1:514322/1‑140 (MQ=255)

                                                                                                          aCCTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCgtgg                            >  2:263759/1‑140 (MQ=255)

                                                                                                           ccTAAATAGTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCgtggg                           >  1:2253210/1‑139 (MQ=255)

                                                                                                                   gTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGAc                   <  1:876794/140‑1 (MQ=255)

                                                                                                                   gTCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGAc                   >  2:1120619/1‑140 (MQ=255)

                                                                                                                    tCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCgtg                             >  1:1226279/1‑129 (MQ=255)

                                                                                                                    tCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGAcc                  >  1:1007451/1‑140 (MQ=255)

                                                                                                                    tCATGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGAc                   >  1:1494944/1‑139 (MQ=255)

                                                                                                                      aTGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGAcc                  <  2:348013/138‑1 (MQ=255)

                                                                                                                      aTGGAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGAcc                  >  1:348013/1‑138 (MQ=255)

                                                                                                                         gAATTCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGACCGAGcc             >  2:1774539/1‑140 (MQ=255)

                                                                                                                          aaTTCGACAAAGCCATGAGTGTTTTGTTCCGGCTCCAGGCGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGACCGAGccc            <  1:1203335/140‑1 (MQ=255)

                                                                                                                            ttCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGACCGAGCCCCg          <  2:2253210/140‑1 (MQ=255)

                                                                                                                             tCGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGACCGAGCCCCGa         <  1:1120619/140‑1 (MQ=255)

                                                                                                                              cGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCCCTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGACCGAGCCCCGAg        <  2:1238340/140‑1 (MQ=255)

                                                                                                                              cGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGACCGAGccc            <  1:1396064/136‑1 (MQ=255)

                                                                                                                              cGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGACCGAGccc            >  2:1396064/1‑136 (MQ=255)

                                                                                                                              cGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGACCGAGCCCCGAg        <  1:2609408/140‑1 (MQ=255)

                                                                                                                              cGACAAAGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGACCGAGCCCCGAg        <  1:194971/140‑1 (MQ=255)

                                                                                                                                  aaaGCCATGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGACCGAGCCCCGAGTTGt    <  2:588596/140‑1 (MQ=255)

GGTGATAGTTTTCGAAACGGGTTTCCGCGATTTTCCCTTCCTCAACCGCTTCCCGGATAGCGCAGCCCGGATCGGTATCGTGTTTGCAATCGCGATATTTACACAGACCTAAATAGTCATGGAATTCGACAAAGCCCTGAGTGATTTGTTCCGGCTCCAGGTGCCAGAGGCCGAACTCACGCACTCCTGGGGAGTCAATCACATCACCGCCGTGCGGGAAGTGATACAGCCGAGCGGCGGTCGTGGTGTGCTGACCGAGCCCCGAGTTGTCA  >  NC_000913/4390519‑4390790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A