Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A17 F30 I1 R1	22	146.6	4936358	99.2%	4896867	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,634,220	G→T	intergenic (‑150/‑12)	guaB ← / → xseA	inosine 5'‑monophosphate dehydrogenase/exodeoxyribonuclease VII subunit XseA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,634,220	0	G	T	100.0%	546.6 / NA	152	intergenic (‑150/‑12)	guaB/xseA	inosine 5'‑monophosphate dehydrogenase/exodeoxyribonuclease VII subunit XseA
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (77/75); total (77/75)

Only 100 of 152 total aligned reads displayed.

GACCAGAGTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTGATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAGCGGCGAAATTTCTAATTTCACGCAAC  >  NC_000913/2634083‑2634355

gACCAGAGTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTAt                                                                                                                                       >  1:2012790/1‑140 (MQ=255)

gACCAGAGTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTAt                                                                                                                                       >  2:512144/1‑140 (MQ=255)

 aCCAGAGTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTAtc                                                                                                                                      <  1:2210140/140‑1 (MQ=255)

 aCCAGAGTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTAtc                                                                                                                                      <  2:2419416/140‑1 (MQ=255)

 aCCAGAGTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTAtc                                                                                                                                      <  1:12663/140‑1 (MQ=255)

 aCCAGAGTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTAtc                                                                                                                                      <  1:138846/140‑1 (MQ=255)

  ccAGAGTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTAtct                                                                                                                                     <  1:1250246/140‑1 (MQ=255)

    agagTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCg                                                                                                                                   <  2:643682/140‑1 (MQ=255)

      agTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCt                                                                                                                                 <  1:1138126/140‑1 (MQ=255)

      agTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCt                                                                                                                                 >  2:1938531/1‑140 (MQ=255)

      agTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCt                                                                                                                                 <  1:1938531/140‑1 (MQ=255)

      agTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCt                                                                                                                                 >  2:1138126/1‑140 (MQ=255)

      agTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCt                                                                                                                                 <  1:99929/140‑1 (MQ=255)

      agTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCt                                                                                                                                 >  2:731716/1‑140 (MQ=255)

          gTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTcaca                                                                                                                             >  2:2278947/1‑140 (MQ=255)

                aaataTTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTAc                                                                                                                       <  1:1526493/140‑1 (MQ=255)

                aaataTTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTAc                                                                                                                       <  1:158960/140‑1 (MQ=255)

                aaataTTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTAc                                                                                                                       <  1:1225808/140‑1 (MQ=255)

                aaataTTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTAc                                                                                                                       <  1:731716/140‑1 (MQ=255)

                  atatTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCt                                                                                                                                 >  1:797114/1‑128 (MQ=255)

                  atatTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCt                                                                                                                     <  2:36146/140‑1 (MQ=255)

                    atTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCt                                                                                                                                 >  2:1063637/1‑126 (MQ=255)

                    atTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCt                                                                                                                                 <  1:1063637/126‑1 (MQ=255)

                    atTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTtc                                                                                                                   >  1:1798383/1‑140 (MQ=255)

                    atTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTtc                                                                                                                   <  1:1128743/140‑1 (MQ=255)

                     ttGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTtct                                                                                                                  >  1:2014338/1‑140 (MQ=255)

                     ttGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCC‑TTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGtt                                                                                                                         <  2:2236449/132‑1 (MQ=255)

                     ttGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCC‑TTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGtt                                                                                                                         >  1:2236449/1‑132 (MQ=255)

                        ccGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCaa                                                                                                               >  2:1815065/1‑140 (MQ=255)

                        ccGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCaa                                                                                                               >  1:2146981/1‑140 (MQ=255)

                         cgcgGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAAt                                                                                                              >  1:1896100/1‑140 (MQ=255)

                          gcgGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATc                                                                                                             <  2:1798383/140‑1 (MQ=255)

                          gcgGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATc                                                                                                             <  1:544455/140‑1 (MQ=255)

                          gcgGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATc                                                                                                             <  2:1884585/140‑1 (MQ=255)

                          gcgGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATc                                                                                                             <  1:2278947/140‑1 (MQ=255)

                              cATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCt                                                                                                         <  2:324202/140‑1 (MQ=255)

                                ttATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGc                                                                                                       <  2:1035406/140‑1 (MQ=255)

                                        agCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTg                                                                                                        <  2:1981889/131‑1 (MQ=255)

                                        agCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGc                                                                                                       >  1:275015/1‑132 (MQ=255)

                                        agCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGc                                                                                                       <  2:275015/132‑1 (MQ=255)

                                        agCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTa                                                                                               >  2:143438/1‑140 (MQ=255)

                                        agCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTa                                                                                               >  2:862494/1‑140 (MQ=255)

                                        agCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTa                                                                                               >  2:827137/1‑140 (MQ=255)

                                          cGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTAcc                                                                                             >  2:2331495/1‑140 (MQ=255)

                                          cGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTAc                                                                                              >  2:1943215/1‑139 (MQ=255)

                                           gTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAAttt                                                                                                  >  1:2393851/1‑134 (MQ=255)

                                           gTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAAttt                                                                                                  <  2:2393851/134‑1 (MQ=255)

                                             aaCCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGtt                                                                                          >  1:854575/1‑140 (MQ=255)

                                             aaCCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGtt                                                                                          >  1:197904/1‑140 (MQ=255)

                                              aCCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTa                                                                                         <  2:807498/140‑1 (MQ=255)

                                              aCCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTa                                                                                         <  2:854575/140‑1 (MQ=255)

                                               ccGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAg                                                                                        <  1:827137/140‑1 (MQ=255)

                                                   ttGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGc                                                                                    <  2:1145338/140‑1 (MQ=255)

                                                   ttGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGc                                                                                    <  2:1473502/140‑1 (MQ=255)

                                                       aTCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGa                                                                                >  1:342729/1‑140 (MQ=255)

                                                             cccTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCaaa                                                                          >  2:2364509/1‑140 (MQ=255)

                                                                 ttttGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAAt                                                                              <  2:1265955/132‑1 (MQ=255)

                                                                 ttttGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGt                                                                      <  1:2331495/140‑1 (MQ=255)

                                                                    tGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCg                                                                   <  2:1125136/140‑1 (MQ=255)

                                                                      cAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTc                                                                 >  1:932068/1‑140 (MQ=255)

                                                                         aaaaTGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTctg                                                               <  2:1160593/139‑1 (MQ=255)

                                                                         aaaaTGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTctg                                                               >  1:1160593/1‑139 (MQ=255)

                                                                            aTGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCtgctgc                                                           <  2:2146981/140‑1 (MQ=255)

                                                                             tgcttgctATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTgctgct                                                          <  1:1074045/140‑1 (MQ=255)

                                                                              gcttgctATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCtt                                                         <  2:932068/140‑1 (MQ=255)

                                                                              gcttgctATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCtt                                                         <  1:1319170/140‑1 (MQ=255)

                                                                              gcttgctATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCtt                                                         <  1:603833/140‑1 (MQ=255)

                                                                                   ctATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCa                                                    <  2:2014338/140‑1 (MQ=255)

                                                                                   ctATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCa                                                    <  1:2364509/140‑1 (MQ=255)

                                                                                            aaGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCtgctgc                                                           >  2:307330/1‑124 (MQ=255)

                                                                                            aaGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCtgctgc                                                           <  1:307330/124‑1 (MQ=255)

                                                                                            aaGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCa                                                    >  1:222222/1‑131 (MQ=255)

                                                                                            aaGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATggg                                           >  1:1630860/1‑140 (MQ=255)

                                                                                            aaGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATggg                                           >  2:129716/1‑140 (MQ=255)

                                                                                             aGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGa                                          <  1:129716/140‑1 (MQ=255)

                                                                                              gggCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGAc                                         <  2:1630860/140‑1 (MQ=255)

                                                                                              gggCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGAc                                         <  2:342729/140‑1 (MQ=255)

                                                                                                 cGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGa                                          <  1:2385590/136‑1 (MQ=255)

                                                                                                 cGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGa                                          >  2:2385590/1‑136 (MQ=255)

                                                                                                 cGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAgg                                      >  2:752732/1‑140 (MQ=255)

                                                                                                  gggTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGa                                          >  2:173308/1‑135 (MQ=255)

                                                                                                  gggTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGa                                          <  1:173308/135‑1 (MQ=255)

                                                                                                  gggTTACTATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGt                                     >  1:419537/1‑140 (MQ=255)

                                                                                                         tATCGACTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATc                              >  2:512002/1‑140 (MQ=255)

                                                                                                              aCTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGAc                                         >  2:1599176/1‑124 (MQ=255)

                                                                                                              aCTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGAc                                         >  1:429509/1‑124 (MQ=255)

                                                                                                              aCTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGAc                                         <  1:1599176/124‑1 (MQ=255)

                                                                                                              aCTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAgcgg                         >  1:345033/1‑140 (MQ=255)

                                                                                                              aCTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAgcgg                         >  1:1535972/1‑140 (MQ=255)

                                                                                                              aCTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAgcgg                         >  1:1610890/1‑140 (MQ=255)

                                                                                                              aCTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAgcgg                         >  1:517060/1‑140 (MQ=255)

                                                                                                              aCTGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAgcgg                         >  1:2112579/1‑140 (MQ=255)

                                                                                                                tGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAgcggcg                       >  2:1346367/1‑140 (MQ=255)

                                                                                                                tGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAgcggcg                       <  2:367491/140‑1 (MQ=255)

                                                                                                                tGAATAACCTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAgcggcg                       <  1:1732961/140‑1 (MQ=255)

                                                                                                                       ccTGCTGATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAGCGGCGAAATTTc                <  2:2399838/140‑1 (MQ=255)

                                                                                                                         tgctgATCTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAGCGGCGAAATTTCTa              >  1:115294/1‑140 (MQ=255)

                                                                                                                            tgATTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAGCGGCGAAATTTCTAAtt           >  1:1785611/1‑140 (MQ=255)

                                                                                                                              aTTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAGCGGCGAAATTTCTAATTTc         >  2:692233/1‑140 (MQ=255)

                                                                                                                              aTTTAGAATTTTATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAGCGGCGAAATTTCTAATTTc         >  2:147398/1‑140 (MQ=255)

GACCAGAGTGGTTAATAAATATTGCCGCGGCATTATACAGAGCGTAACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCCCGAAGGGCGGGTTACTATCGACTGAATAACCTGCTGATTTAGAATTTGATCTCGCTCACATGTTACCTTCTCAATCCCCTGCAATTTTTACCGTTAGTCGCCTGAATCAAACGGTTCGTCTGCTGCTTGAGCATGAGATGGGACAGGTTTGGATCAGCGGCGAAATTTCTAATTTCACGCAAC  >  NC_000913/2634083‑2634355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A