Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F73 I1 R1 26 74.0 2563470 99.3% 2545525 139.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,849,127 C→A G39C (GGC→TGC)  hycC ← formate hydrogenlyase subunit HycC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,849,1270CA100.0% 236.8 / NA 67G39C (GGC→TGC) hycCformate hydrogenlyase subunit HycC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (37/30);  total (37/30)

GAGCGTAATCAGCCAAATCGCGTTAAGCGGAGAGATTTGCACATCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCC  >  NC_000913/2848990‑2849262
                                                                                                                                         |                                                                                                                                       
gAGCGTAATCAGCCAAATCGCGTTAAGCGGAGAGATTTGCACATCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGcgcagc                                                                                                                                       >  1:443081/1‑140 (MQ=255)
 aGCGTAATCAGCCAAATCGCGTTAAGCGGAGAGATTTGCACATCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCgcagcc                                                                                                                                      >  1:837434/1‑140 (MQ=255)
                 tCGCGTTAAGCGGAGAGATTTGCACATCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAg                                                                                                                      <  2:443081/140‑1 (MQ=255)
                    cgTTAAGCGGAGAGATTTGCACATCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCa                                                                                                                   >  1:1191168/1‑140 (MQ=255)
                               gagaTTTGCACATCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCttt                                                                                                        <  2:623125/140‑1 (MQ=255)
                                    ttGCACATCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTgaa                                                                                                   >  1:983692/1‑140 (MQ=255)
                                    ttGCACATCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTgaa                                                                                                   <  1:854915/140‑1 (MQ=255)
                                     tGCACATCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTgaaa                                                                                                  >  1:621269/1‑140 (MQ=255)
                                      gCACATCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTgaaaa                                                                                                 <  1:1080659/140‑1 (MQ=255)
                                      gCACATCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTgaaaa                                                                                                 <  1:83461/140‑1 (MQ=255)
                                        acaTCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTgaaaaga                                                                                               >  2:1091836/1‑140 (MQ=255)
                                          aTCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTgaaaagaaa                                                                                             <  1:576605/140‑1 (MQ=255)
                                            cGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGaaaagaaaag                                                                                           >  1:1251290/1‑140 (MQ=255)
                                             gTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAaaagaaaaga                                                                                          <  2:727539/140‑1 (MQ=255)
                                               aGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAgaga                                                                                        <  2:876761/140‑1 (MQ=255)
                                                               cgcACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAgcgg                                                                        >  1:330057/1‑140 (MQ=255)
                                                                gcACCGCTCACGCCAACCGCGCCAGTCAGTACAGAGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAgcggc                                                                       <  2:21020/140‑1 (MQ=255)
                                                                      cTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGAc                                                                 >  2:24116/1‑140 (MQ=255)
                                                                      cTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGAc                                                                 >  1:761874/1‑140 (MQ=255)
                                                                              aaCCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAAccacg                                                         >  2:463651/1‑140 (MQ=255)
                                                                                ccGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAAccacgcc                                                       >  1:685072/1‑140 (MQ=255)
                                                                                 cgcgCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAAccacgcca                                                      <  2:1251290/140‑1 (MQ=255)
                                                                                 cgcgCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAAccacgcca                                                      <  1:340909/140‑1 (MQ=255)
                                                                                   cgcCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAAccacgccacg                                                    <  2:105460/140‑1 (MQ=255)
                                                                                         tcagtACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTa                                              <  1:159746/140‑1 (MQ=255)
                                                                                         tcagtACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATCCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTa                                              <  1:48789/140‑1 (MQ=255)
                                                                                             tACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGa                                          >  1:946063/1‑140 (MQ=255)
                                                                                              aCAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGAt                                         <  1:971136/140‑1 (MQ=255)
                                                                                                  tGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAgg                                     >  2:118221/1‑140 (MQ=255)
                                                                                                  tGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAgg                                     >  2:1105038/1‑140 (MQ=255)
                                                                                                  tGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAgg                                     >  2:1153467/1‑140 (MQ=255)
                                                                                                  tGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAgg                                     >  2:388927/1‑140 (MQ=255)
                                                                                                  tGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAgg                                     >  2:581113/1‑140 (MQ=255)
                                                                                                       cccGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAAt                                >  1:739278/1‑140 (MQ=255)
                                                                                                       cccGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAAt                                >  1:672114/1‑140 (MQ=255)
                                                                                                       cccGCGGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAAt                                >  2:1120219/1‑140 (MQ=255)
                                                                                                           cgGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTgcg                            <  1:91826/140‑1 (MQ=255)
                                                                                                           cgGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTgcg                            <  1:841457/140‑1 (MQ=255)
                                                                                                           cgGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTgcg                            <  2:933580/140‑1 (MQ=255)
                                                                                                           cgGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTgcg                            <  2:761874/140‑1 (MQ=255)
                                                                                                           cgGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTgcg                            <  1:24116/140‑1 (MQ=255)
                                                                                                           cgGCTGCCGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTgcg                            <  1:318571/140‑1 (MQ=255)
                                                                                                                 ccGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCAtt                      >  2:1179500/1‑140 (MQ=255)
                                                                                                                  cGTATACAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCAttt                     <  1:1179500/140‑1 (MQ=255)
                                                                                                                     ataCAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGc                  <  1:215784/140‑1 (MQ=255)
                                                                                                                     ataCAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGc                  <  2:647484/140‑1 (MQ=255)
                                                                                                                      taCAGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGcc                 <  2:685072/140‑1 (MQ=255)
                                                                                                                         aGACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCTGGGAAATTGCGCTCATTTAGCctct              <  2:837434/140‑1 (MQ=255)
                                                                                                                          gACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCtctc             <  2:983692/140‑1 (MQ=255)
                                                                                                                          gACTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCtctc             <  2:1191168/140‑1 (MQ=255)
                                                                                                                           aCTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCtctc             >  1:338193/1‑139 (MQ=255)
                                                                                                                           aCTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCtctc             <  2:338193/139‑1 (MQ=255)
                                                                                                                           aCTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTcc            >  2:968608/1‑140 (MQ=255)
                                                                                                                           aCTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTcc            >  1:499180/1‑140 (MQ=255)
                                                                                                                           aCTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTcc            >  1:1256469/1‑140 (MQ=255)
                                                                                                                           aCTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTcc            >  2:647627/1‑140 (MQ=255)
                                                                                                                           aCTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTcc            >  2:1118135/1‑140 (MQ=255)
                                                                                                                           aCTACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTcc            >  2:749878/1‑140 (MQ=255)
                                                                                                                             tACCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCAc          >  1:922132/1‑140 (MQ=255)
                                                                                                                              aCCAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACt         >  1:355349/1‑140 (MQ=255)
                                                                                                                               ccAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACtt        >  2:1116875/1‑140 (MQ=255)
                                                                                                                                cAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACttt       >  2:419977/1‑140 (MQ=255)
                                                                                                                                cAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACttt       >  1:280642/1‑140 (MQ=255)
                                                                                                                                cAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACttt       >  2:381660/1‑140 (MQ=255)
                                                                                                                                cAACCGCGCAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACttt       >  1:731330/1‑140 (MQ=255)
                                                                                                                                    cgcgCAGCCAATTCCAGCTATCCAACCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGc   <  1:226079/140‑1 (MQ=255)
                                                                                                                                     gcgcAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGcc  >  2:1136928/1‑140 (MQ=255)
                                                                                                                                     gcgcAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGcc  >  2:934238/1‑140 (MQ=255)
                                                                                                                                     gcgcAGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGcc  >  2:1234034/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GAGCGTAATCAGCCAAATCGCGTTAAGCGGAGAGATTTGCACATCGTAGCTTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCC  >  NC_000913/2848990‑2849262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A