Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	146	75.3	2562504	98.6%	2526628	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,951,513	A→G	pseudogene (954/1645 nt)	ilvG →	acetolactate synthase II subunit IlvG, N‑terminal fragment (pseudogene)

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,951,513	0	A	G	97.7%	318.7 / ‑2.7	88	pseudogene (954/1645 nt)	ilvG	acetolactate synthase II subunit IlvG, N‑terminal fragment (pseudogene)
Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (43/43); total (44/44)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.09e-01

GGGTGACCGGCAAACTGAACACCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCG  >  NC_000913/3951386‑3951648

gggTGACCGGCAAACTGAACACCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTAcag                                                                                                                             <  2:98511/140‑1 (MQ=255)

gggTGACCGGCAAACTGAACACCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTAcag                                                                                                                             <  1:217524/140‑1 (MQ=255)

 ggTGACCGGCAAACTGAACACCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGACAGCATTAcagc                                                                                                                            >  2:510071/1‑140 (MQ=255)

  gTGACCGGCAAACTGAACACCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTAcagca                                                                                                                           <  2:42139/140‑1 (MQ=255)

  gTGACCGGCAAACTGAACACCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTAcagca                                                                                                                           <  1:504639/140‑1 (MQ=255)

        ggCAAACTGAACACCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGtt                                                                                                                     <  1:624051/140‑1 (MQ=255)

         gCAAACTGAACACCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTa                                                                                                                    >  1:398404/1‑140 (MQ=255)

            aaCTGAACACCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAAt                                                                                                                 >  2:823885/1‑140 (MQ=255)

                gAACACCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAAt                                                                                                             <  1:823885/140‑1 (MQ=255)

                 aaCACCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATg                                                                                                            >  1:1093667/1‑140 (MQ=255)

                  acacCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGa                                                                                                           <  1:963441/140‑1 (MQ=255)

                  acacCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGa                                                                                                           <  2:1093667/140‑1 (MQ=255)

                  acacCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGa                                                                                                           <  2:840564/140‑1 (MQ=255)

                   cacCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGAc                                                                                                          >  2:998328/1‑140 (MQ=255)

                    acCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTTTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACt                                                                                                         <  2:489888/140‑1 (MQ=255)

                    acCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACt                                                                                                         <  2:930162/140‑1 (MQ=255)

                           cgcCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGgcagca                                                                                                  >  1:729863/1‑140 (MQ=255)

                                cacGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACt                                                                                             >  2:796205/1‑140 (MQ=255)

                                cacGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACt                                                                                             >  2:1109008/1‑140 (MQ=255)

                                     cAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTgcgcg                                                                                        <  1:1270296/140‑1 (MQ=255)

                                        tgtTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAg                                                                                     >  2:514789/1‑140 (MQ=255)

                                        tgtTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAg                                                                                     >  2:1126413/1‑140 (MQ=255)

                                          ttATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCt                                                                                   <  1:413309/140‑1 (MQ=255)

                                          tcaTCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCt                                                                                   <  1:794106/138‑1 (MQ=255)

                                            aTCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGc                                                                                 <  1:798514/140‑1 (MQ=255)

                                             tCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTTATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCg                                                                                >  1:698664/1‑140 (MQ=255)

                                             tCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTgcgcg                                                                                        >  1:460631/1‑132 (MQ=255)

                                             tCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTgcgcg                                                                                        <  2:460631/132‑1 (MQ=255)

                                             tCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCg                                                                                >  1:15461/1‑140 (MQ=255)

                                             tCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCg                                                                                >  1:629848/1‑140 (MQ=255)

                                               cATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGtg                                                                              <  2:398404/140‑1 (MQ=255)

                                               cATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGtg                                                                              >  2:471439/1‑140 (MQ=255)

                                               cATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGtg                                                                              >  2:489373/1‑140 (MQ=255)

                                                  atGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGtgatg                                                                           >  2:187583/1‑140 (MQ=255)

                                                  atGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGtgatg                                                                           >  2:885701/1‑140 (MQ=255)

                                                  atGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGtgatg                                                                           >  1:775110/1‑140 (MQ=255)

                                                  atGGATATCGACCCGGCAGAAATGAACAAGCTGCATCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATCACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGtgatg                                                                           >  2:905896/1‑140 (MQ=255)

                                                    ggATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGaa                                                                         <  1:1109008/140‑1 (MQ=255)

                                                    ggATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGaa                                                                         <  2:1055397/140‑1 (MQ=255)

                                                       tatCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACAt                                                                      >  2:322844/1‑140 (MQ=255)

                                                         tCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTc                                                                    <  2:805558/140‑1 (MQ=255)

                                                         tCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTc                                                                    >  2:856262/1‑140 (MQ=255)

                                                           gACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCt                                                                  >  1:868263/1‑140 (MQ=255)

                                                           gACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCt                                                                  >  1:1075039/1‑140 (MQ=255)

                                                           gACCCGACAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCt                                                                  >  1:667217/1‑140 (MQ=255)

                                                            aCCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTg                                                                 >  1:70321/1‑140 (MQ=255)

                                                            aCCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTg                                                                 <  1:356815/140‑1 (MQ=255)

                                                                ggCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGt                                                             <  1:796205/140‑1 (MQ=255)

                                                                 gCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGtt                                                            >  1:122515/1‑140 (MQ=255)

                                                                      aaTGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGAc                                                       <  1:1134185/140‑1 (MQ=255)

                                                                       aTGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGAcc                                                      >  2:500040/1‑140 (MQ=255)

                                                                         gAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCAt                                                    <  1:747278/140‑1 (MQ=255)

                                                                         gAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCAt                                                    <  2:168110/140‑1 (MQ=255)

                                                                             aaGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCg                                                <  1:24788/140‑1 (MQ=255)

                                                                               gCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGt                                              <  2:868263/140‑1 (MQ=255)

                                                                               gCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGt                                              <  1:187583/140‑1 (MQ=255)

                                                                                 tGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGa                                            <  1:471439/140‑1 (MQ=255)

                                                                                 tGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGa                                            >  1:619022/1‑140 (MQ=255)

                                                                                   cGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACg                                          <  2:234723/140‑1 (MQ=255)

                                                                                   cGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACg                                          <  2:122515/140‑1 (MQ=255)

                                                                                    gTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGc                                         >  1:375829/1‑140 (MQ=255)

                                                                                     tCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCt                                        >  1:875291/1‑140 (MQ=255)

                                                                                         gCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCt                                    >  2:459211/1‑140 (MQ=255)

                                                                                              tgtgGCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTAcgcg                               <  2:875291/140‑1 (MQ=255)

                                                                                                  gCATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgt                           >  2:138558/1‑140 (MQ=255)

                                                                                                   cATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgtt                          <  1:514789/140‑1 (MQ=255)

                                                                                                   cATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgtt                          >  1:810460/1‑140 (MQ=255)

                                                                                                   cATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgtt                          <  1:1126413/140‑1 (MQ=255)

                                                                                                   cATTACAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgtt                          <  2:810460/140‑1 (MQ=255)

                                                                                                       aCAAGGTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttg                      >  1:1136819/1‑140 (MQ=255)

                                                                                                           ggTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgtt                          <  2:21309/132‑1 (MQ=255)

                                                                                                           ggTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgtt                          >  1:21309/1‑132 (MQ=255)

                                                                                                           ggTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaa                  >  1:890801/1‑140 (MQ=255)

                                                                                                           ggTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaa                  <  2:667217/140‑1 (MQ=255)

                                                                                                           ggTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaa                  <  1:138558/140‑1 (MQ=255)

                                                                                                            gTGATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaaa                 >  1:24650/1‑140 (MQ=255)

                                                                                                              gATTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaac               <  1:998328/140‑1 (MQ=255)

                                                                                                               aTTTAAATGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaaca              >  1:1011332/1‑140 (MQ=255)

                                                                                                                    aaTGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGt         <  2:70321/140‑1 (MQ=255)

                                                                                                                      tGCTCTGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCg       <  1:856262/140‑1 (MQ=255)

                                                                                                                         tctGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCg       <  2:701661/137‑1 (MQ=255)

                                                                                                                         tctGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCg       >  1:701661/1‑137 (MQ=255)

                                                                                                                         tctGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGAt    >  1:46309/1‑140 (MQ=255)

                                                                                                                         tctGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaaaa                <  1:18371/128‑1 (MQ=255)

                                                                                                                         tctGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaaaa                >  2:18371/1‑128 (MQ=255)

                                                                                                                           tGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaac               >  1:249969/1‑127 (MQ=255)

                                                                                                                           tGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaac               <  2:249969/127‑1 (MQ=255)

                                                                                                                           tGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCg  >  1:589530/1‑140 (MQ=255)

                                                                                                                           tGTTGCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCg  <  2:375829/140‑1 (MQ=255)

GGGTGACCGGCAAACTGAACACCTTCGCGCCACACGCCAGTGTTATCCATATGGATATCGACCCGGCAGAAATGAACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCG  >  NC_000913/3951386‑3951648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A