Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F28 I1 R1
|
146 |
75.3 |
2562504 |
98.6% |
2526628 |
139.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,345,152 |
A→G |
V136A (GTC→GCC) |
yjdF ← |
conserved inner membrane protein YjdF |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,345,152 | 0 | A | G | 98.6%
| 255.9
/ ‑4.1
| 70 | V136A (GTC→GCC) | yjdF | conserved inner membrane protein YjdF |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (39/30); minor base T (1/0); total (40/30) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.87e-01 |
AACATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGACCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACTCAACCCCAGCCATTC > NC_000913/4345020‑4345288
|
aaCATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCACTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGaa > 1:880605/1‑140 (MQ=255)
aCATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAAc > 2:1059517/1‑140 (MQ=255)
atatCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGc < 2:463266/140‑1 (MQ=255)
tCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGccac < 2:401265/140‑1 (MQ=255)
aTTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCAtt > 1:94318/1‑140 (MQ=255)
aTTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCAtt > 1:843524/1‑140 (MQ=255)
cGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTAc > 2:265801/1‑140 (MQ=255)
cGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTAc > 2:953289/1‑140 (MQ=255)
cGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTAc > 2:432274/1‑140 (MQ=255)
cGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTAc > 2:765505/1‑140 (MQ=255)
cccACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCcg < 1:265801/140‑1 (MQ=255)
cccACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCcg < 1:267167/140‑1 (MQ=255)
cccACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCcg > 1:427480/1‑140 (MQ=255)
ccACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCcgc < 1:432274/140‑1 (MQ=255)
cACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCcgcg < 1:641439/140‑1 (MQ=255)
cACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCcgcg < 2:937955/140‑1 (MQ=255)
tGGTCGCCCTGGGTGCCGAGAAAATCAACCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCAc > 2:341813/1‑140 (MQ=255)
cTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCcg < 2:877935/127‑1 (MQ=255)
cTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCcg > 1:877935/1‑127 (MQ=255)
gCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGaa < 2:94318/140‑1 (MQ=255)
gagaAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACga > 1:426281/1‑140 (MQ=255)
gagaAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACga > 1:502026/1‑140 (MQ=255)
aaaTCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAAt > 2:1242028/1‑140 (MQ=255)
tCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCA‑TTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGccac < 2:992816/140‑1 (MQ=255)
cccTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGccac < 1:622985/140‑1 (MQ=255)
aCCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTg > 2:554811/1‑140 (MQ=255)
aTTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAgg > 2:201816/1‑140 (MQ=255)
aTTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAgg > 2:989558/1‑140 (MQ=255)
ttGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCa < 1:287193/137‑1 (MQ=255)
ttGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCa > 2:287193/1‑137 (MQ=255)
aGCGCTGCCCACCACTCGATTAATTCATACATCGCACTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAg < 2:467242/140‑1 (MQ=255)
cgcTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGcc > 2:297193/1‑140 (MQ=255)
cgcTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGcc > 1:313113/1‑140 (MQ=255)
gCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTg > 1:1272443/1‑140 (MQ=255)
cccACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTgg > 2:307224/1‑140 (MQ=255)
ccacTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCTCCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGaaaa < 2:847643/140‑1 (MQ=255)
tCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGTCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTg > 2:901970/1‑140 (MQ=255)
gATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGcc < 1:297193/140‑1 (MQ=255)
gATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGcc > 1:103704/1‑140 (MQ=255)
aTTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGccc < 2:103704/140‑1 (MQ=255)
aTTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGc < 1:989558/140‑1 (MQ=255)
aTTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGc > 1:743604/1‑140 (MQ=255)
tACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTc > 1:787523/1‑140 (MQ=255)
tACATCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTc > 2:527952/1‑140 (MQ=255)
aTCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATa < 1:1059517/140‑1 (MQ=255)
aTCGCGCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATa < 2:732767/140‑1 (MQ=255)
cgcgCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGccc < 2:859441/126‑1 (MQ=255)
cgcgCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGccc > 1:859441/1‑126 (MQ=255)
cgcgCTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACg > 2:232516/1‑140 (MQ=255)
gcgcTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTg < 1:622361/132‑1 (MQ=255)
gcgcTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTg > 2:622361/1‑132 (MQ=255)
gcgcTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACgg > 2:849167/1‑140 (MQ=255)
cgcTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGa > 1:1243443/1‑140 (MQ=255)
cgcTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGa > 1:783720/1‑140 (MQ=255)
cgcTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGa > 2:9164/1‑140 (MQ=255)
cgcTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGa > 1:487126/1‑140 (MQ=255)
cgcTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGa > 2:1068143/1‑140 (MQ=255)
cgcTTATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACAAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGa > 2:791268/1‑140 (MQ=255)
ttATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTa < 1:232516/140‑1 (MQ=255)
tATCGCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTAc < 1:307224/140‑1 (MQ=255)
gCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACt < 2:487126/140‑1 (MQ=255)
gCCAGCGCCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACt < 1:765505/140‑1 (MQ=255)
cgcCACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACTCAAcc > 1:406810/1‑140 (MQ=255)
cACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGAtt < 2:548104/126‑1 (MQ=255)
cACGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGAtt > 1:548104/1‑126 (MQ=255)
cGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACTCAACCCCAGc > 1:403426/1‑140 (MQ=255)
cGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACTCAACCCCAGc < 1:953289/140‑1 (MQ=255)
cGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACTCAACCCCAGc < 1:527952/140‑1 (MQ=255)
cGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACTCAACCCCAGc < 1:201816/140‑1 (MQ=255)
cGCAGCAGGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACTCAACCCCAGc > 2:1106775/1‑140 (MQ=255)
cagGCCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACTCAACCCCAGCCATTc < 1:341813/140‑1 (MQ=255)
|
AACATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGACCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACTCAACCCCAGCCATTC > NC_000913/4345020‑4345288
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
