Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	146	75.3	2562504	98.6%	2526628	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,624,114	A→G	S2P (TCC→CCC)	lplA ←	lipoate‑‑protein ligase A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,624,114	0	A	G	100.0%	238.7 / NA	65	S2P (TCC→CCC)	lplA	lipoate‑‑protein ligase A
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (39/26); total (39/26)

ACCAATTACTACCGTGTCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTAGCAGCGTG  >  NC_000913/4623977‑4624247

aCCAATTACTACCGTGTCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCa                                                                                                                                     >  2:1047001/1‑140 (MQ=255)

    aTTACTACCGTGTCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAAc                                                                                                                                 >  2:817303/1‑140 (MQ=255)

           ccGTGTCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTcc                                                                                                                          >  2:891952/1‑140 (MQ=255)

             gtgtCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCtt                                                                                                                        >  1:738250/1‑140 (MQ=255)

              tgtCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCttt                                                                                                                       >  1:745102/1‑140 (MQ=255)

              tgtCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCttt                                                                                                                       >  2:548371/1‑140 (MQ=255)

              tgtCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCttt                                                                                                                       >  1:554020/1‑140 (MQ=255)

               gtCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTc                                                                                                                      <  2:782935/140‑1 (MQ=255)

               gtCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTc                                                                                                                      >  2:1149458/1‑140 (MQ=255)

                tCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCt                                                                                                                     >  2:617069/1‑140 (MQ=255)

                tCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCt                                                                                                                     >  1:518256/1‑140 (MQ=255)

                  ggCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTg                                                                                                                   <  2:1211247/140‑1 (MQ=255)

                       tGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTgtagta                                                                                                              <  2:1176725/140‑1 (MQ=255)

                       tGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTgtagta                                                                                                              >  1:455456/1‑140 (MQ=255)

                        gcgcCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTaa                                                                                                             >  1:743587/1‑140 (MQ=255)

                         cgcCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCt                                                                                                                     >  2:1265112/1‑131 (MQ=255)

                         cgcCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCt                                                                                                                     <  1:1265112/131‑1 (MQ=255)

                         cgcCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAAt                                                                                                            >  2:691328/1‑140 (MQ=255)

                                        aCGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCtttttt                                                                                             >  1:717397/1‑140 (MQ=255)

                                         cgcgCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTtc                                                                                            <  2:338665/140‑1 (MQ=255)

                                          gcgcTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTtct                                                                                           <  2:554020/140‑1 (MQ=255)

                                            gcTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCg                                                                                         >  2:1068687/1‑140 (MQ=255)

                                            gcTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCg                                                                                         <  1:617069/140‑1 (MQ=255)

                                                          aTTTGGGGAAAAATACACTCTTCCACCGACAGGTTAAACCACGGGAGGTAAGAGGTAGAGATGGGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTGTTTTTTCTCGCTTtcttcctcttc                                                                           >  2:70025/1‑140 (MQ=255)

                                                          aTTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTtcttcctcttc                                                                           >  1:184112/1‑140 (MQ=255)

                                                          aTTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAAAGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTtcttcctcttc                                                                           >  1:653728/1‑140 (MQ=255)

                                                          aTTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGGCGTAAGAGTCAGAGATGAGCAAGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTtcttcctcttc                                                                           >  1:232517/1‑140 (MQ=255)

                                                             tGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGGCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCgg                                                                        >  1:192349/1‑140 (MQ=255)

                                                                        acacTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGc                                                             <  1:891952/140‑1 (MQ=255)

                                                                            tctTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGc                                                         <  2:518256/140‑1 (MQ=255)

                                                                              ttCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCgg                                                       >  1:994937/1‑140 (MQ=255)

                                                                                 cACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTa                                                    >  1:225314/1‑140 (MQ=255)

                                                                                   ccGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAAc                                                  <  2:994937/140‑1 (MQ=255)

                                                                                        aGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGaa                                             >  1:504648/1‑140 (MQ=255)

                                                                                          gTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAGCAGGAAgg                                           >  1:809370/1‑140 (MQ=255)

                                                                                              aaCCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGa                                       >  1:881537/1‑140 (MQ=255)

                                                                                               aCCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGAt                                      >  2:806639/1‑140 (MQ=255)

                                                                                                 cACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATtg                                    <  2:349286/140‑1 (MQ=255)

                                                                                                   cGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATtgct                                  >  1:738754/1‑140 (MQ=255)

                                                                                                   cGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATtgct                                  <  2:455456/140‑1 (MQ=255)

                                                                                                    gggTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATtgctg                                 >  2:924957/1‑140 (MQ=255)

                                                                                                    gggTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATtgctg                                 >  1:1135188/1‑140 (MQ=255)

                                                                                                    gggTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATtgctg                                 >  2:363659/1‑140 (MQ=255)

                                                                                                    gggTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATtgctg                                 >  1:251314/1‑140 (MQ=255)

                                                                                                                  agagATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGtt                   <  1:1047001/140‑1 (MQ=255)

                                                                                                                  agagATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGtt                   >  2:235058/1‑140 (MQ=255)

                                                                                                                  agagATGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGtt                   >  2:551319/1‑140 (MQ=255)

                                                                                                                    agaTGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTa                 <  2:1135188/140‑1 (MQ=255)

                                                                                                                    agaTGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTa                 >  1:893078/1‑140 (MQ=255)

                                                                                                                      aTGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCTCTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTAcc               <  1:70025/140‑1 (MQ=255)

                                                                                                                      aTGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGTGGGTGCGTTTAcc               <  1:548371/140‑1 (MQ=255)

                                                                                                                      aTGAGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTAcc               <  2:43901/140‑1 (MQ=255)

                                                                                                                         aGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTg            >  2:736492/1‑140 (MQ=255)

                                                                                                                         aGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTg            >  2:1032203/1‑140 (MQ=255)

                                                                                                                         aGCAGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTg            >  2:347685/1‑140 (MQ=255)

                                                                                                                            aGGCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTag         <  2:738250/140‑1 (MQ=255)

                                                                                                                              gCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAGTGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTagca       <  1:817303/140‑1 (MQ=255)

                                                                                                                              gCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGtt                   >  2:530824/1‑128 (MQ=255)

                                                                                                                              gCGTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGtt                   <  1:530824/128‑1 (MQ=255)

                                                                                                                                gTAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTagcagc     >  1:932522/1‑140 (MQ=255)

                                                                                                                                 tAATGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACCGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTAGCAGCg    <  2:881537/140‑1 (MQ=255)

                                                                                                                                   aTGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAGCAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTAGCAGCGTg  <  2:809370/140‑1 (MQ=255)

                                                                                                                                   aTGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTAGCAGCGTg  <  2:717397/140‑1 (MQ=255)

                                                                                                                                   aTGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTAGCAGCGTg  <  2:184112/140‑1 (MQ=255)

                                                                                                                                   aTGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTAGCAGCGTg  <  2:893078/140‑1 (MQ=255)

                                                                                                                                   aTGTGGGCATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTAGCAGCGTg  <  1:235058/140‑1 (MQ=255)

ACCAATTACTACCGTGTCGGCATTGCGCCAGAGAAACAGAACGCGCTGCGTGGCGGGCATTTGGCGAAAAATACACTCTTCCACCGCCAGGTTAAACCACGGGTCGTAAGAGTCAGAGATGAGCAGGCGTAATGTGGACATAACGATTTCCTTTCTTGTAGTAATGGGTCACTCTTTTTTCTCGCTTTCTTCCTCTTCCGGCACCGGTTTGCTGGCGGTTAACAGGAAGGGCGATTGCTGCCAGCGGGTGCGTTTACCCTGTAGCAGCGTG  >  NC_000913/4623977‑4624247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A