Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	153	60.1	2040486	99.3%	2026202	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,746,406	T→C	intergenic (‑221/+28)	rpsP ← / ← ffh	30S ribosomal subunit protein S16/signal recognition particle protein component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,746,406	0	T	C	100.0%	212.7 / NA	62	intergenic (‑221/+28)	rpsP/ffh	30S ribosomal subunit protein S16/signal recognition particle protein component
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (30/32); total (30/32)

TTGCGGGAATTGCAATCAACAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATGTCGTCGAACT  >  NC_000913/2746274‑2746540

ttGCGGGAATTGCAATCAACAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCaaaa                                                                                                                                 <  1:704875/140‑1 (MQ=255)

       aaTTGCAATCAACAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCaaa                                                                                                                          <  1:732550/140‑1 (MQ=255)

        aTTGCAATCAACAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCCGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAAc                                                                                                                         >  1:498927/1‑140 (MQ=255)

                cAACAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAgg                                                                                                                 <  2:24499/140‑1 (MQ=255)

                       tGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTa                                                                                                          <  2:892091/140‑1 (MQ=255)

                           aaCTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGa                                                                                                      >  1:550026/1‑140 (MQ=255)

                           aaCTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGa                                                                                                      <  2:550026/140‑1 (MQ=255)

                            aCTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGAc                                                                                                     <  2:726611/140‑1 (MQ=255)

                                tgctgTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCGCAGCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAgg                                                                                                 <  2:526598/140‑1 (MQ=255)

                                tgctgTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTa                                                                                                          >  1:636329/1‑131 (MQ=255)

                                tgctgTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTa                                                                                                          <  2:636329/131‑1 (MQ=255)

                                tgctgTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAgg                                                                                                 <  1:595344/140‑1 (MQ=255)

                                tgctgTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAgg                                                                                                 >  1:694094/1‑140 (MQ=255)

                                tgctgTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAgg                                                                                                 <  2:790245/140‑1 (MQ=255)

                                 gctgTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAggg                                                                                                <  1:1001051/140‑1 (MQ=255)

                                     tAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGc                                                                                            >  2:715525/1‑140 (MQ=255)

                                      aaaaGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGcc                                                                                           >  1:357701/1‑140 (MQ=255)

                                       aaaGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCt                                                                                          <  1:156624/140‑1 (MQ=255)

                                         aGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTgg                                                                                        <  2:920785/140‑1 (MQ=255)

                                          ggCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTggg                                                                                       >  2:702955/1‑140 (MQ=255)

                                          ggCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTggg                                                                                       <  1:608783/140‑1 (MQ=255)

                                            ccGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTggggg                                                                                     >  1:885275/1‑140 (MQ=255)

                                               tCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGcat                                                                                  >  1:280970/1‑140 (MQ=255)

                                                  gcggTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGcatcat                                                                               <  2:307250/140‑1 (MQ=255)

                                                     gTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATAcc                                                                            >  2:798915/1‑140 (MQ=255)

                                                     gTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATAcc                                                                            <  2:357701/140‑1 (MQ=255)

                                                           ccAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCAt                                                                      <  1:715525/140‑1 (MQ=255)

                                                            cAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATg                                                                     <  1:123278/140‑1 (MQ=255)

                                                               tttGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCtt                                                                  >  1:351497/1‑140 (MQ=255)

                                                               tttGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCtt                                                                  >  2:218348/1‑140 (MQ=255)

                                                                   gTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCtca                                                              <  1:218348/140‑1 (MQ=255)

                                                                       cGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTcatcat                                                          <  2:280970/140‑1 (MQ=255)

                                                                       cGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTcatcat                                                          <  2:351497/140‑1 (MQ=255)

                                                                         gAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCt                                                        >  1:559051/1‑140 (MQ=255)

                                                                          aGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCtt                                                       >  1:448904/1‑140 (MQ=255)

                                                                              cgcgcAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGcc                                                   >  1:708720/1‑140 (MQ=255)

                                                                                    gTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCg                                             >  2:375379/1‑140 (MQ=255)

                                                                                         cGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCctt                                        <  2:448904/140‑1 (MQ=255)

                                                                                               gTACACGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCAt                                  >  1:567399/1‑140 (MQ=255)

                                                                                                 acacGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCa                                                  >  1:1009155/1‑122 (MQ=255)

                                                                                                 acacGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCa                                                  <  2:1009155/122‑1 (MQ=255)

                                                                                                 acacGCAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCAttt                                >  1:24460/1‑140 (MQ=255)

                                                                                                      cAGTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTttcttc                           >  1:812350/1‑140 (MQ=255)

                                                                                                        gTACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTtcat                         >  1:472197/1‑140 (MQ=255)

                                                                                                         tACTTGCGGATGTCGAGCACATCCCGGGGCCAAAATGGCAAAGAAGCCAGGCCGATTAGTGACCAGGGAAGCCTGTGGGCATCATACCCTTCATGCTTCTCTTAATCTTCACCATTCCGCCCTTCTTCAGTTTCTtcatc                        <  2:755316/140‑1 (MQ=255)

                                                                                                         tACGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTtcatc                        >  2:269003/1‑140 (MQ=255)

                                                                                                          aCGTGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTtcatca                       <  2:498927/140‑1 (MQ=255)

                                                                                                             tGAGGATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATgc                    >  1:40639/1‑140 (MQ=255)

                                                                                                               atgATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATgcgc                  >  1:446872/3‑140 (MQ=255)

                                                                                                                 gATGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTg                <  2:472197/140‑1 (MQ=255)

                                                                                                                   tGACGCGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCCCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCa              >  2:661745/1‑140 (MQ=255)

                                                                                                                   tGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCa              >  2:934786/1‑140 (MQ=255)

                                                                                                                   tGACGAGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCa              >  1:64099/1‑140 (MQ=255)

                                                                                                                        aGCACATCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATgtcg         >  2:238655/1‑140 (MQ=255)

                                                                                                                            caTCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATGTCGTCGa     <  1:798915/140‑1 (MQ=255)

                                                                                                                            caTCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATGTCGTCGa     <  2:446872/140‑1 (MQ=255)

                                                                                                                             aTCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATGTCGTCGaa    <  2:694094/140‑1 (MQ=255)

                                                                                                                             aTCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATGTCGTCGaa    <  2:708720/140‑1 (MQ=255)

                                                                                                                              tCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATGTCGTCGaa    <  2:141846/139‑1 (MQ=255)

                                                                                                                              tCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATGTCGTCGaa    >  1:141846/1‑139 (MQ=255)

                                                                                                                              tCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATGTCGTCGAAc   <  2:64099/140‑1 (MQ=255)

                                                                                                                              tCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATGTCGTCGAAc   <  1:597121/140‑1 (MQ=255)

                                                                                                                              tCCCGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATGTCGTCGAAc   <  1:661745/140‑1 (MQ=255)

                                                                                                                               cccGGCGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTACTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATGTCGTCGAACt  >  1:4709/1‑140 (MQ=255)

TTGCGGGAATTGCAATCAACAGTTGCTAACTCTGCTGTAAAAGGCCGTCGGCGGTGCAGCCAGTTTGGTGCCGGAGTGCGCGCAGTCACCGGAGCGTACACGCAGTACGTGAGGATGACGAGCACATCCCGGTGCCAAAATGGCAAACAAGCCAGGCCGATTAGCGACCAGGGAAGCCTGGGGGCATCATACCCTTCATGCTTCTCATCATCTTCGCCATTCCGCCCTTCTTCATTTTCTTCATCATGCGCTGCATGTCGTCGAACT  >  NC_000913/2746274‑2746540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A