Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	153	60.1	2040486	99.3%	2026202	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,218,087	A→G	G330G (GGT→GGC)	aer ←	aerotaxis sensor receptor, flavoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,218,087	0	A	G	100.0%	199.4 / NA	57	G330G (GGT→GGC)	aer	aerotaxis sensor receptor, flavoprotein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (29/28); total (29/28)

CTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCACCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTG  >  NC_000913/3217951‑3218218

cTTCCACCGCCGCATTTAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGccc                                                                                                                                  >  2:362851/1‑140 (MQ=255)

  tCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTg                                                                                                                                <  2:61479/140‑1 (MQ=255)

  tCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTg                                                                                                                                <  1:328380/140‑1 (MQ=255)

   ccACCGCCGCATTTAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGc                                                                                                                               <  1:362851/140‑1 (MQ=255)

          cgcATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCg                                                                                                                        >  2:983534/1‑140 (MQ=255)

                 aGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACt                                                                                                                 >  1:562536/1‑140 (MQ=255)

                   ggCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTgg                                                                                                               >  2:146339/1‑140 (MQ=255)

                             ttGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGa                                                                                                     >  2:508368/1‑140 (MQ=255)

                                   tGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGttt                                                                                               >  2:731802/1‑140 (MQ=255)

                                       aCGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTATCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCg                                                                                           <  2:56397/140‑1 (MQ=255)

                                          cAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGa                                                                                                     >  2:56410/1‑127 (MQ=255)

                                          cAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGa                                                                                                     <  1:56410/127‑1 (MQ=255)

                                                 gTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACg                                                                                 <  2:950587/140‑1 (MQ=255)

                                                     aTCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGt                                                                             >  1:327106/1‑140 (MQ=255)

                                                       cAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTgg                                                                           <  2:327106/140‑1 (MQ=255)

                                                          cGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCag                                                                        >  2:865425/1‑140 (MQ=255)

                                                            aaGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCagag                                                                      <  1:449341/140‑1 (MQ=255)

                                                                  tGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGt                                                                >  1:594612/1‑140 (MQ=255)

                                                                    gTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGttt                                                              >  2:568907/1‑140 (MQ=255)

                                                                         aaTGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCg                                                         >  2:700528/1‑140 (MQ=255)

                                                                            gcgcTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGAcg                                                      >  2:111677/1‑140 (MQ=255)

                                                                               cTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGAcgccg                                                   >  1:704960/1‑140 (MQ=255)

                                                                                   gTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCAt                                               <  1:176175/140‑1 (MQ=255)

                                                                                    tACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCAtt                                              <  2:562536/140‑1 (MQ=255)

                                                                                    tACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCAtt                                              <  2:594612/140‑1 (MQ=255)

                                                                                     aCTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCAttt                                             >  1:112293/1‑140 (MQ=255)

                                                                                      cTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTg                                            >  2:524439/1‑140 (MQ=255)

                                                                                       tGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTgg                                           >  2:671667/1‑140 (MQ=255)

                                                                                            gCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCAt                                      >  2:238570/1‑140 (MQ=255)

                                                                                            gCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCAt                                      >  1:155145/1‑140 (MQ=255)

                                                                                            gCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCAt                                      <  1:508368/140‑1 (MQ=255)

                                                                                               atatCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGt                                   <  1:865425/140‑1 (MQ=255)

                                                                                               atatCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGt                                   <  1:433485/140‑1 (MQ=255)

                                                                                                tatCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTc                                  <  2:202411/140‑1 (MQ=255)

                                                                                                 atCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCg                                 <  2:704960/140‑1 (MQ=255)

                                                                                                     tCCATTGTCTTGATCACCGTGGTCATCGCCTACCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCAc                             >  1:495429/1‑140 (MQ=255)

                                                                                                       cATTGTCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCg                           <  2:112293/140‑1 (MQ=255)

                                                                                                            tCTTGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGc                      >  1:971815/1‑140 (MQ=255)

                                                                                                              ttGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTg                    <  1:524439/140‑1 (MQ=255)

                                                                                                               tGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGa                   <  1:146339/140‑1 (MQ=255)

                                                                                                               tGATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGa                   <  2:750266/140‑1 (MQ=255)

                                                                                                                gATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGt                          >  1:601465/1‑132 (MQ=255)

                                                                                                                gATCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGt                          <  2:601465/132‑1 (MQ=255)

                                                                                                                  tCACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACg                <  2:971815/140‑1 (MQ=255)

                                                                                                                   cACCGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTCGGTTCATGGTCGCCACCGTTTGCTGAACGt               >  2:695897/1‑140 (MQ=255)

                                                                                                                      cGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTAt            >  1:551679/1‑140 (MQ=255)

                                                                                                                      cGTGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTAt            >  2:151578/1‑140 (MQ=255)

                                                                                                                        tGGTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGCTTCATGGTCGCCACCGTTTGCTGAACGTTATCa          >  2:399291/1‑140 (MQ=255)

                                                                                                                          ttCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGGAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAAc        <  1:892763/139‑1 (MQ=255)

                                                                                                                          gTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATc           >  1:132559/1‑137 (MQ=255)

                                                                                                                          gTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATc           <  2:132559/137‑1 (MQ=255)

                                                                                                                          gTCATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAAc        >  1:443848/1‑140 (MQ=255)

                                                                                                                            cATCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTg      <  1:578936/140‑1 (MQ=255)

                                                                                                                             aTCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGt     >  2:84508/1‑140 (MQ=255)

                                                                                                                             aTCGCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGt     <  1:144212/140‑1 (MQ=255)

                                                                                                                                gCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTctg  <  2:551679/140‑1 (MQ=255)

                                                                                                                                gCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTctg  <  1:84508/140‑1 (MQ=255)

                                                                                                                                gCCTCCCCGCCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTctg  <  1:111677/140‑1 (MQ=255)

CTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCCTCCCCACCCTGCACTGCCGCATTACTGGCAGTGATTGACAGTTTATCGGCAGCCGACGCCGTGGCAGAGTTCTGTTTCACCGACGCCGCCATTTGGTTCATGGTCGCCACCGTTTGCTGAACGTTATCAACTGTCTG  >  NC_000913/3217951‑3218218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A