Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
153 |
60.1 |
2040486 |
99.3% |
2026202 |
138.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,538,312 |
G→A |
V310I (GTC→ATC) |
yhgF → |
putative RNA‑binding protein YhgF |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,538,312 | 0 | G | A | 100.0%
| 223.0
/ NA
| 63 | V310I (GTC→ATC) | yhgF | putative RNA‑binding protein YhgF |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (31/32); total (31/32) |
CGCCTGAACAATGCCCCGGCGGATAGCTGGCGCAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACGTCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTAAAAGTGGCGGTGGTCGATGCCACTGGCAAACTGGTGGCGACCGA > NC_000913/3538177‑3538448
|
cgcCTGAACAATGCCCCGGCGGATAGCTGGCGCAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCtt > 2:582400/1‑140 (MQ=255)
gcCTGAACAATGCCCCGGCGGATAGCTGGCGCAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCttt > 1:371307/1‑140 (MQ=255)
cccGGCGGATAGCTGGCGCAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGc < 2:799495/140‑1 (MQ=255)
cacggcggATAGCTGGCGCAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGc < 2:690972/138‑1 (MQ=255)
cggcggATAGCTGGCGCAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGc > 2:427153/1‑138 (MQ=255)
cggcggATAGCTGGCGCAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGc < 1:427153/138‑1 (MQ=255)
cggcggATAGCTGGCGCAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCAc > 2:102109/1‑140 (MQ=255)
gATAGCTGGCGCAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTaa < 1:709744/128‑1 (MQ=255)
gATAGCTGGCGCAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTaa > 2:709744/1‑128 (MQ=255)
tAGCTGGCGCAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATctgc > 1:943740/1‑140 (MQ=255)
gcAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATggcg > 2:923832/1‑140 (MQ=255)
gcAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATggcg > 2:42864/1‑140 (MQ=255)
aaaGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATggcggc < 2:371307/140‑1 (MQ=255)
aaaGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATggcggc < 1:924933/140‑1 (MQ=255)
aGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGccc > 1:551660/1‑140 (MQ=255)
tggtgAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAATATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGcc > 1:300050/1‑140 (MQ=255)
gtgAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCgg > 2:739405/1‑140 (MQ=255)
gAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGAc < 1:42864/140‑1 (MQ=255)
aGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACt < 1:731452/140‑1 (MQ=255)
aGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACt < 2:1000936/140‑1 (MQ=255)
cTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATggcggc > 2:309549/1‑126 (MQ=255)
cTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATggcggc < 1:309549/126‑1 (MQ=255)
cTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGa < 2:385442/136‑1 (MQ=255)
cTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGa > 1:385442/1‑136 (MQ=255)
ggACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGTTGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGt > 1:457810/1‑140 (MQ=255)
gACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTg > 2:778557/1‑140 (MQ=255)
gACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTg > 2:895443/1‑140 (MQ=255)
ggCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACg > 2:348364/1‑140 (MQ=255)
ggCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACg > 1:14199/1‑140 (MQ=255)
ggCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACg > 2:919573/1‑140 (MQ=255)
cgcATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGAt < 1:895443/140‑1 (MQ=255)
aaGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCt < 2:14199/140‑1 (MQ=255)
tGCTGATGCATCTGGAAACCGAACTGTTGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGAt < 2:457810/140‑1 (MQ=255)
tGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGAt > 1:716698/1‑140 (MQ=255)
gCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATc < 2:772986/140‑1 (MQ=255)
cTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGAt > 2:324467/1‑128 (MQ=255)
cTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGAt < 1:324467/128‑1 (MQ=255)
tGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCg < 2:943740/140‑1 (MQ=255)
gATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCgg > 2:678934/1‑140 (MQ=255)
aTGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGTGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCggg > 1:218786/1‑140 (MQ=255)
aTGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCggg < 1:718622/140‑1 (MQ=255)
tGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGt < 2:643442/140‑1 (MQ=255)
tGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGt < 2:551660/140‑1 (MQ=255)
tCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGc > 1:932331/1‑140 (MQ=255)
gAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTAc < 1:923832/140‑1 (MQ=255)
gAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTAc < 1:102109/140‑1 (MQ=255)
gAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTAc < 2:932331/140‑1 (MQ=255)
gAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTAc < 1:678934/140‑1 (MQ=255)
cGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTgggg > 1:764102/1‑140 (MQ=255)
gAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGt < 1:739405/140‑1 (MQ=255)
aaCTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTa > 1:330158/1‑140 (MQ=255)
gCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTAAAAGTGGCg < 2:764102/140‑1 (MQ=255)
cACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTaaa > 2:998314/1‑132 (MQ=255)
cACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTaaa < 1:998314/132‑1 (MQ=255)
aCCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTAAAAGTGGCggt > 1:171643/1‑140 (MQ=255)
ccGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTAAAAGTGGCggtg < 1:879166/140‑1 (MQ=255)
cGTGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTAAAAGTGGCggtgg > 1:525910/1‑140 (MQ=255)
tGCGCGAACGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTAAAAGTGGCGGTGGTc > 1:716412/1‑140 (MQ=255)
aaCGTGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTAAAAGTGGCGGTGGTCGATGcc < 2:716412/140‑1 (MQ=255)
tGCGGAAGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTAAAAGTGGCGGTGGGCGGTGCCAccg > 2:903291/1‑138 (MQ=255)
aaGATGAAGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTAAAAGTGGCGGTGGTCGATGCCACTGGCaaa < 2:171643/140‑1 (MQ=255)
aaGCAATCAACATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTAAAAGTGGCGGTGGTCGATGCCACTGGCAAACtggtg < 1:919573/140‑1 (MQ=255)
aaCATCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTAAAAGTGGCGGTGGTCGATGCCACTGGCAAACTGGTGGcgaccga < 1:348364/140‑1 (MQ=255)
|
CGCCTGAACAATGCCCCGGCGGATAGCTGGCGCAAAGGCGTGGTGAGCTGGACGTGGCGCATCAAGGTGCTGATGCATCTGGAAACCGAACTGATGGGCACCGTGCGCGAACGTGCGGAAGATGAAGCAATCAACGTCTTTGCCCGTAACCTGCACGATCTGCTGATGGCGGCCCCTGCCGGACTGCGTGCAACGATGGGCCTCGATCCGGGTCTGCGTACTGGGGTAAAAGTGGCGGTGGTCGATGCCACTGGCAAACTGGTGGCGACCGA > NC_000913/3538177‑3538448
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A