Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F28 I1 R1	112	94.0	3211786	99.3%	3189303	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,918,124	T→C	T48A (ACC→GCC)	atpG ←	ATP synthase F1 complex subunit gamma

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,918,124	0	T	C	100.0%	331.8 / NA	91	T48A (ACC→GCC)	atpG	ATP synthase F1 complex subunit gamma
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (49/42); total (49/42)

AATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGC  >  NC_000913/3917987‑3918258

aaTGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGctt                                                                                                                                      >  1:854905/1‑140 (MQ=255)

       aaaCCACCGCACAAACCACGGTCGGTCGACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATa                                                                                                                               >  2:448307/1‑140 (MQ=255)

       aaaCCACCGCACAAACCACGGTCGGTCGACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCCTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATa                                                                                                                               >  1:56830/1‑140 (MQ=255)

              cGCACAAACCACGGTCGGTCGACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACgg                                                                                                                        >  2:644638/1‑140 (MQ=255)

                       cACGGTCGGTCGACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGgccgcc                                                                                                               <  1:356601/140‑1 (MQ=255)

                               gtcgACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATc                                                                                                       >  2:1134769/1‑140 (MQ=255)

                                 cgACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCt                                                                                                     >  1:365767/1‑140 (MQ=255)

                                     accaccAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATg                                                                                                            >  2:800321/1‑129 (MQ=255)

                                     accaccAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATg                                                                                                            <  1:800321/129‑1 (MQ=255)

                                      ccaccaGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGAt                                                                                                >  1:1436845/1‑140 (MQ=255)

                                                 cccACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCAtttt                                                                                     <  2:1311345/140‑1 (MQ=255)

                                                 cccACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCAtttt                                                                                     >  2:1165697/1‑140 (MQ=255)

                                                      gcgTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAg                                                                                >  1:771425/1‑140 (MQ=255)

                                                      gcgTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAg                                                                                >  2:59144/1‑140 (MQ=255)

                                                       cgTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGTGATTTACGCATTTTGGAAgc                                                                               >  2:1257129/1‑140 (MQ=255)

                                                         tttAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAgcgg                                                                             <  2:1436845/140‑1 (MQ=255)

                                                           tAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGTGATTTACGCATTTTGGAAgcggcg                                                                           <  1:1257129/140‑1 (MQ=255)

                                                           tAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAgcggcg                                                                           >  1:540565/1‑140 (MQ=255)

                                                            aaCGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGa                                                                          <  2:978484/140‑1 (MQ=255)

                                                            aaCGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGa                                                                          <  1:433700/140‑1 (MQ=255)

                                                              cGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGAcc                                                                        <  2:365767/140‑1 (MQ=255)

                                                               gTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCa                                                                       <  1:1165697/140‑1 (MQ=255)

                                                                  gcgGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCAtct                                                                    >  2:1231710/1‑140 (MQ=255)

                                                                  gcgGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCAtct                                                                    >  1:756590/1‑140 (MQ=255)

                                                                   cgGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCAtctc                                                                   <  1:1231710/140‑1 (MQ=255)

                                                                   cgGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCAtctc                                                                   <  1:1264646/140‑1 (MQ=255)

                                                                   cgGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCAtctc                                                                   <  2:191891/140‑1 (MQ=255)

                                                                   cgGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCAtctc                                                                   <  1:644638/140‑1 (MQ=255)

                                                                      tcctCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCAt                                                                <  2:56830/137‑1 (MQ=255)

                                                                      tCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCAt                                                                <  1:983021/140‑1 (MQ=255)

                                                                        ttCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCg                                                              <  1:59144/140‑1 (MQ=255)

                                                                           cAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCtt                                                           <  1:448307/140‑1 (MQ=255)

                                                                           cAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCtt                                                           <  2:939751/140‑1 (MQ=255)

                                                                                aaGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGc                                                             >  1:280208/1‑133 (MQ=255)

                                                                                aaGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGc                                                             <  2:280208/133‑1 (MQ=255)

                                                                                aaGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTg                                                      >  2:257583/1‑140 (MQ=255)

                                                                                  gggTGCTTATATTCCAGATTACCGTGTGCAAGGTGACTAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGAt                                                    >  1:561792/1‑140 (MQ=255)

                                                                                  gggTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGTACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGt                                                       <  2:1539373/137‑1 (MQ=255)

                                                                                  gggTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGTACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGt                                                       >  1:1539373/1‑137 (MQ=255)

                                                                                  gggTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGAt                                                    >  1:595626/1‑140 (MQ=255)

                                                                                  gggTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGAt                                                    >  1:839747/1‑140 (MQ=255)

                                                                                  gggTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGAt                                                    >  2:1356279/1‑140 (MQ=255)

                                                                                   ggTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATc                                                   >  2:256380/1‑140 (MQ=255)

                                                                                   ggTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATc                                                   >  1:443647/1‑140 (MQ=255)

                                                                                     tGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCtt                                                 >  2:882383/1‑140 (MQ=255)

                                                                                       cTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCAt                                                                <  2:902621/123‑1 (MQ=255)

                                                                                       cTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCAt                                                                >  1:902621/1‑123 (MQ=255)

                                                                                       cTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCtttt                                               >  1:1193404/1‑140 (MQ=255)

                                                                                       cTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCtttt                                               >  2:498768/1‑140 (MQ=255)

                                                                                        ttATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGt                                                       >  2:95301/1‑131 (MQ=255)

                                                                                        ttATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGt                                                       <  1:95301/131‑1 (MQ=255)

                                                                                        ttATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTg                                              >  1:411364/1‑140 (MQ=255)

                                                                                        ttATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTg                                              >  2:1218585/1‑140 (MQ=255)

                                                                                         tataTTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGc                                             <  1:702972/140‑1 (MQ=255)

                                                                                         tataTTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGc                                             <  1:1600056/140‑1 (MQ=255)

                                                                                         tataTTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGc                                             >  2:1600056/1‑140 (MQ=255)

                                                                                         tataTTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGc                                             <  2:569327/140‑1 (MQ=255)

                                                                                                  gATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTTTgg                                    >  2:463743/1‑140 (MQ=255)

                                                                                                  gATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTgg                                    >  1:813819/1‑140 (MQ=255)

                                                                                                   aTTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGtt                                        >  1:81311/1‑135 (MQ=255)

                                                                                                   aTTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGtt                                        <  2:81311/135‑1 (MQ=255)

                                                                                                   aTTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGa                                   >  2:135863/1‑140 (MQ=255)

                                                                                                     tACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACg                                 >  2:28520/1‑140 (MQ=255)

                                                                                                     tACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACg                                 >  1:200225/1‑140 (MQ=255)

                                                                                                        cGTGTGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCtt                              >  2:849167/1‑140 (MQ=255)

                                                                                                         gtgtGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTg                             <  2:756590/140‑1 (MQ=255)

                                                                                                         gtgtGCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTg                             <  2:595626/140‑1 (MQ=255)

                                                                                                          tgtgCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGc                            <  1:701952/140‑1 (MQ=255)

                                                                                                           gtgCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCg                           <  1:257583/140‑1 (MQ=255)

                                                                                                            tgCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACg                                 <  2:1087262/133‑1 (MQ=255)

                                                                                                            tgCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACg                                 >  1:1087262/1‑133 (MQ=255)

                                                                                                            tgCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCtt                              >  2:892252/1‑136 (MQ=255)

                                                                                                            tgCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCtt                              <  1:892252/136‑1 (MQ=255)

                                                                                                            tgCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGa                          <  1:131841/140‑1 (MQ=255)

                                                                                                             gCAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGAt                         >  2:540678/1‑140 (MQ=255)

                                                                                                              cAAGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATc                        <  1:1356279/140‑1 (MQ=255)

                                                                                                                aGGTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCtt                      <  1:256380/140‑1 (MQ=255)

                                                                                                                 ggTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTta                     <  1:1134769/140‑1 (MQ=255)

                                                                                                                 ggTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTta                     >  2:663593/1‑140 (MQ=255)

                                                                                                                 ggTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTta                     >  1:336938/1‑140 (MQ=255)

                                                                                                                 ggTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTta                     <  2:195849/140‑1 (MQ=255)

                                                                                                                  gTGACCAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTtac                    <  1:498768/140‑1 (MQ=255)

                                                                                                                     aCCAATCACTTTGCGCATGGCTTCTGCATAAGGACGACTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTtactac                 >  2:669416/1‑140 (MQ=255)

                                                                                                                      ccAATCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACg                >  1:496606/1‑140 (MQ=255)

                                                                                                                         aTCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTg                             <  2:1252222/124‑1 (MQ=255)

                                                                                                                         aTCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTg                             >  1:1252222/1‑124 (MQ=255)

                                                                                                                         aTCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTAt             <  2:771425/140‑1 (MQ=255)

                                                                                                                         aTCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTAt             <  1:663593/140‑1 (MQ=255)

                                                                                                                          tCACTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTTTGGACGCTTGCGATCTTACTACGTAtc            <  1:463743/140‑1 (MQ=255)

                                                                                                                             cTTTGCGCATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATctct         >  2:914104/1‑140 (MQ=255)

                                                                                                                                  cgcATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTgc    >  2:1236391/1‑140 (MQ=255)

                                                                                                                                    cATGGCTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTgcgc  >  1:1476943/1‑140 (MQ=255)

AATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGC  >  NC_000913/3917987‑3918258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A