Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	151	83.1	2798978	99.4%	2782184	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,015,088	T→C	intergenic (‑31/‑72)	yqeC ← / → mocA	uncharacterized protein YqeC/molybdenum cofactor cytidylyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,015,088	0	T	C	100.0%	268.7 / NA	75	intergenic (‑31/‑72)	yqeC/mocA	uncharacterized protein YqeC/molybdenum cofactor cytidylyltransferase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (28/47); total (28/47)

AAAGCAAGCTGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTATCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTATCATCAAGAATGGGGCAATGGAAAA  >  NC_000913/3014952‑3015223

aaaGCAAGCTGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTAcccc                                                                                                                                      <  1:1255431/140‑1 (MQ=255)

aaaGCAAGCTGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTAcccc                                                                                                                                      <  2:1301259/140‑1 (MQ=255)

     aagcTGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACt                                                                                                                                 <  2:313985/140‑1 (MQ=255)

     aagcTGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACt                                                                                                                                 >  1:808314/1‑140 (MQ=255)

      agcTGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACtt                                                                                                                                >  1:489301/1‑140 (MQ=255)

         tGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAAt                                                                                                                             <  2:382732/140‑1 (MQ=255)

         tGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAAt                                                                                                                             <  1:518918/140‑1 (MQ=255)

          ggTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATc                                                                                                                            <  1:465001/140‑1 (MQ=255)

          ggTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATc                                                                                                                            <  2:1032775/140‑1 (MQ=255)

               tCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCa                                                                                                                       <  1:257672/140‑1 (MQ=255)

                 cccccAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAgg                                                                                                                     <  1:150480/140‑1 (MQ=255)

                   cccAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGaa                                                                                                                   >  1:490888/1‑140 (MQ=255)

                    ccAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAg                                                                                                                  <  1:201161/140‑1 (MQ=255)

                     cAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGt                                                                                                                 >  2:765984/1‑140 (MQ=255)

                                acaGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTAt                                                                                                      <  1:50662/140‑1 (MQ=255)

                                  aGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACCTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCa                                                                                                    >  2:874560/1‑140 (MQ=255)

                                    aaaTCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAgg                                                                                                  <  2:741478/140‑1 (MQ=255)

                                     aaTCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGc                                                                                                 <  1:126934/140‑1 (MQ=255)

                                     aaTCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGc                                                                                                 <  1:823788/140‑1 (MQ=255)

                                     aaTCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGc                                                                                                 <  2:920799/140‑1 (MQ=255)

                                      aTCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCg                                                                                                <  2:490888/140‑1 (MQ=255)

                                           aGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGttatt                                                                                           >  2:589900/1‑140 (MQ=255)

                                             tGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAg                                                                                         <  2:1045253/140‑1 (MQ=255)

                                             tGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAg                                                                                         <  1:1080610/140‑1 (MQ=255)

                                             tGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAg                                                                                         <  1:839869/140‑1 (MQ=255)

                                             tGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAg                                                                                         <  2:489301/140‑1 (MQ=255)

                                             tGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAg                                                                                         >  1:435848/1‑140 (MQ=255)

                                             tGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAg                                                                                         <  1:1141225/140‑1 (MQ=255)

                                              gggACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGc                                                                                        <  2:576461/140‑1 (MQ=255)

                                               ggACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGcc                                                                                       >  1:528143/1‑140 (MQ=255)

                                                 aCGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGcccc                                                                                     <  1:765984/140‑1 (MQ=255)

                                                     ttCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCtata                                                                                 >  2:50881/1‑140 (MQ=255)

                                                     ttCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCtata                                                                                 >  1:1286113/1‑140 (MQ=255)

                                                     ttCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCta                                                                                   >  1:347330/1‑138 (MQ=255)

                                                     ttCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCta                                                                                   <  2:347330/138‑1 (MQ=255)

                                                        tGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTataaat                                                                              <  1:1312101/140‑1 (MQ=255)

                                                            cACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATg                                                                          >  2:227790/1‑140 (MQ=255)

                                                             aCCTAAATCAATGACTAATGCCGATGGGTCAACTATACTCTTCACCAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAGTTCATCAGCAAGTAACACAATTATCACACGTTGTCAGTCTCTATAAATAATgg                                                                         <  2:1381081/140‑1 (MQ=255)

                                                                  aaTCTATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCa                                                                    <  2:1286113/140‑1 (MQ=255)

                                                                  aaTCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCGATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCa                                                                    <  1:70456/140‑1 (MQ=255)

                                                                       aTGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATg                                                                          >  1:1255897/1‑129 (MQ=255)

                                                                       aTGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATg                                                                          <  2:1255897/129‑1 (MQ=255)

                                                                        tGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGt                                                              <  2:983726/140‑1 (MQ=255)

                                                                        tGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACCATGt                                                              <  1:934363/140‑1 (MQ=255)

                                                                         gACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAAcc                                                                     >  1:187052/1‑132 (MQ=255)

                                                                         gACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAAcc                                                                     <  2:187052/132‑1 (MQ=255)

                                                                         gACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGt                                                              <  1:908745/139‑1 (MQ=255)

                                                                         gACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGt                                                              >  2:908745/1‑139 (MQ=255)

                                                                         gACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCAATAAATAATGGAACCACTATGTc                                                             >  1:223408/1‑140 (MQ=255)

                                                                           cTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAg                                                           <  1:301284/140‑1 (MQ=255)

                                                                               tGCCGATGTGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCAt                                                       <  2:528143/140‑1 (MQ=255)

                                                                                gCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATc                                                      <  1:107845/140‑1 (MQ=255)

                                                                                  cGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTCCCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGa                                                    <  1:333140/140‑1 (MQ=255)

                                                                                  cGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGa                                                    <  1:409842/140‑1 (MQ=255)

                                                                                   gATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGAc                                                   <  1:1127889/140‑1 (MQ=255)

                                                                                    aTGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACt                                                  >  2:1300608/1‑140 (MQ=255)

                                                                                    aTGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACt                                                  >  2:1153973/1‑140 (MQ=255)

                                                                                        gTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGtat                                              >  1:577343/1‑140 (MQ=255)

                                                                                         tCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCAt                                                       <  2:334517/130‑1 (MQ=255)

                                                                                         tCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCAt                                                       >  1:334517/1‑130 (MQ=255)

                                                                                         tCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGtata                                             >  1:853025/1‑140 (MQ=255)

                                                                                         tCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGtata                                             >  1:621726/1‑140 (MQ=255)

                                                                                         tCAACTATACTTTTCACGAGTCTCTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGtata                                             >  2:543703/1‑140 (MQ=255)

                                                                                                     ttCACGAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGcc                                 <  1:50881/140‑1 (MQ=255)

                                                                                                          gAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGAtt                            <  1:227790/140‑1 (MQ=255)

                                                                                                          gAGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGAtt                            <  2:596706/140‑1 (MQ=255)

                                                                                                           aGTCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTa                           <  1:244622/140‑1 (MQ=255)

                                                                                                             tCTTTATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTatc                         <  2:808314/140‑1 (MQ=255)

                                                                                                                ttATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTatcatc                      <  1:589900/140‑1 (MQ=255)

                                                                                                                 tATGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTAtcatca                     >  1:728194/1‑140 (MQ=255)

                                                                                                                  aTGACCTCTCTGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAGTGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTATCATCaa                    <  1:780805/140‑1 (MQ=255)

                                                                                                                        tctctGGGATAAATTACCCCCAACTTAATCCATCATGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTATCATCAAGAATgg              >  1:12385/1‑140 (MQ=255)

                                                                                                                         ctctGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTATCATCAAGAATggg             >  2:125836/1‑140 (MQ=255)

                                                                                                                          tctGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTATCATCAAGAATgggg            <  2:728194/140‑1 (MQ=255)

                                                                                                                           ctGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTATCATCAAGAATGGGGc           >  1:1139259/1‑140 (MQ=255)

                                                                                                                            tGGGATAAATTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTATCATCAAGAATGGGGCa          <  1:512816/140‑1 (MQ=255)

                                                                                                                                  aaaTTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTATCATCAAGAATGGGGCAATGGaa    <  1:125836/140‑1 (MQ=255)

                                                                                                                                    aTTACCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTATCATCAAGAATGGGGCAATGGaaaa  >  2:8967/1‑140 (MQ=255)

AAAGCAAGCTGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTATACTTTTCACGAGTCTTTATGACCTCTCTGGGATAAATTATCCCCAACTTAATCCATCAGGAAGTAACGCAATTATCAGGCGTTATTAGCCCCTATAAATAATGGAACCACTATGTCAGCCATCGACTGTATAATTACCGCTGCCGGATTATCATCAAGAATGGGGCAATGGAAAA  >  NC_000913/3014952‑3015223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A