Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 151 83.1 2798978 99.4% 2782184 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,304,117 T→C intergenic (‑8/+11) mdtN ← / ← ytcA putative multidrug efflux pump membrane fusion protein/putative lipoprotein YtcA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,304,1170TC98.9% 318.9 / ‑4.5 89intergenic (‑8/+11)mdtN/ytcAputative multidrug efflux pump membrane fusion protein/putative lipoprotein YtcA
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (40/48);  total (40/49)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01

TAAGCGTCATTAGTTGATGGCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGTCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGTGATGAGCGTCAAAATAAG  >  NC_000913/4303982‑4304253
                                                                                                                                       |                                                                                                                                        
tAAGCGTCATTAGTTGATGGCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCa                                                                                                                                      >  2:788835/1‑140 (MQ=255)
  aGCGTCATTAGTTGATGGCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCaaa                                                                                                                                    <  1:488102/140‑1 (MQ=255)
  aGCGTCATTAGTTGATGGCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCaaa                                                                                                                                    <  1:660673/140‑1 (MQ=255)
       cATTAGTTGATGGCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGAt                                                                                                                               <  1:1208973/140‑1 (MQ=255)
         ttAGTTGATGGCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTa                                                                                                                             >  2:660405/1‑140 (MQ=255)
             ttGATGGCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGaaa                                                                                                                         >  2:668501/1‑140 (MQ=255)
               gATGGCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCaaa                                                                                                                                    >  1:217693/1‑127 (MQ=255)
               gATGGCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCaaa                                                                                                                                    <  2:217693/127‑1 (MQ=255)
                 tGGCGCATTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATg                                                                                                                     >  1:37045/1‑140 (MQ=255)
                 tGGCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATg                                                                                                                     <  1:103429/140‑1 (MQ=255)
                 tGGCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATg                                                                                                                     >  1:258847/1‑140 (MQ=255)
                  ggCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATgc                                                                                                                    >  1:27422/1‑140 (MQ=255)
                    cgcACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATgcca                                                                                                                  >  2:539467/1‑140 (MQ=255)
                      cACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATgccagc                                                                                                                >  2:1356165/1‑140 (MQ=255)
                        cTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATgccagcca                                                                                                              <  2:518856/140‑1 (MQ=255)
                             tACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATg                                                                                                                     <  2:877117/128‑1 (MQ=255)
                             tACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATg                                                                                                                     >  1:877117/1‑128 (MQ=255)
                             tACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACa                                                                                                         <  1:844809/140‑1 (MQ=255)
                             tACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACa                                                                                                         <  1:764725/140‑1 (MQ=255)
                             tACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACa                                                                                                         <  1:539467/140‑1 (MQ=255)
                             tACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACa                                                                                                         <  2:258847/140‑1 (MQ=255)
                               cgcgCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGc                                                                                                       <  1:388871/140‑1 (MQ=255)
                               cgcgCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGc                                                                                                       <  1:415794/140‑1 (MQ=255)
                               cgcgCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGc                                                                                                       <  1:515794/140‑1 (MQ=255)
                                gcgcCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCa                                                                                                      <  2:860725/140‑1 (MQ=255)
                                gcgcCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCa                                                                                                      <  1:660405/140‑1 (MQ=255)
                                     aGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATg                                                                                                    >  1:836179/1‑137 (MQ=255)
                                     aGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATg                                                                                                    <  2:836179/137‑1 (MQ=255)
                                     aGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCg                                                                                                 >  1:328997/1‑140 (MQ=255)
                                     aGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCg                                                                                                 >  2:121511/1‑140 (MQ=255)
                                     aGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCg                                                                                                 >  1:1067437/1‑140 (MQ=255)
                                     aGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCg                                                                                                 >  1:249176/1‑140 (MQ=255)
                                     aGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCg                                                                                                 >  2:307821/1‑140 (MQ=255)
                                     aGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCg                                                                                                 >  2:637101/1‑140 (MQ=255)
                                       aTAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAACTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTa                                                                                               <  1:202697/140‑1 (MQ=255)
                                             aaaaCAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGc                                                                                         <  2:161749/140‑1 (MQ=255)
                                                    gggCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAgg                                                                                  <  1:51246/140‑1 (MQ=255)
                                                     ggCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAggg                                                                                 <  1:668501/140‑1 (MQ=255)
                                                     ggCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAggg                                                                                 <  1:1065209/140‑1 (MQ=255)
                                                     ggCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAggg                                                                                 <  1:541147/140‑1 (MQ=255)
                                                     ggCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAggg                                                                                 >  2:788944/1‑140 (MQ=255)
                                                     ggCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAggg                                                                                 <  2:821619/140‑1 (MQ=255)
                                                      gCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGc                                                                                <  2:37045/140‑1 (MQ=255)
                                                       cAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCg                                                                               <  2:1374158/140‑1 (MQ=255)
                                                         acaaGCGCCAACGCAACACCTAACAGAGCAGGGTATTTACTGCGAGGAGCTTTTTTCGGCGGACTTTCCACGAGCGAGTCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGGAGAGAGCAAAAAGGGCggg                                                                             <  2:34396/137‑2 (MQ=255)
                                                         aCCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGt                                                                             <  2:445727/140‑1 (MQ=255)
                                                          ccAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGta                                                                            >  2:369363/1‑140 (MQ=255)
                                                                      cAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAggg                                                                                 <  2:168101/123‑1 (MQ=255)
                                                                      cAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAggg                                                                                 >  1:168101/1‑123 (MQ=255)
                                                                        aCCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGAc                                                              >  2:786960/1‑140 (MQ=255)
                                                                          cACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACaa                                                            <  2:328997/140‑1 (MQ=255)
                                                                             tAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATg                                                         <  1:224236/140‑1 (MQ=255)
                                                                              aaCAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGc                                                        <  2:1343382/140‑1 (MQ=255)
                                                                              aaCAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGc                                                        <  1:609701/140‑1 (MQ=255)
                                                                                   agCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGc                                                        >  1:589919/1‑135 (MQ=255)
                                                                                   agCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGc                                                        <  2:589919/135‑1 (MQ=255)
                                                                                   agCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGAt                                                   >  1:143594/1‑140 (MQ=255)
                                                                                   agCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGAt                                                   >  1:452129/1‑140 (MQ=255)
                                                                                   agCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGAt                                                   >  1:291293/1‑140 (MQ=255)
                                                                                   agCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGAt                                                   >  1:533005/1‑140 (MQ=255)
                                                                                   agCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGAt                                                   >  1:140815/1‑140 (MQ=255)
                                                                                   agCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGAt                                                   <  2:452129/140‑1 (MQ=255)
                                                                                   agCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGAt                                                   >  2:75029/1‑140 (MQ=255)
                                                                                   agCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGAt                                                   >  1:687233/1‑140 (MQ=255)
                                                                                   agCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGAt                                                   >  1:899319/1‑140 (MQ=255)
                                                                                    gCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGAtt                                                  >  2:1056363/1‑140 (MQ=255)
                                                                                       gggAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGat                                               >  1:84152/1‑140 (MQ=255)
                                                                                             ttACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGc                                         >  1:875586/1‑140 (MQ=255)
                                                                                              tACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGcc                                        <  2:291293/140‑1 (MQ=255)
                                                                                              tACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGcc                                        <  1:788835/140‑1 (MQ=255)
                                                                                               aCTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGccc                                       <  2:84152/140‑1 (MQ=255)
                                                                                               aCTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGccc                                       <  1:201336/140‑1 (MQ=255)
                                                                                                cTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCg                                      <  1:410990/140‑1 (MQ=255)
                                                                                                 tGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCTTGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGc                                     <  1:1221781/140‑1 (MQ=255)
                                                                                                  gCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCt                                    <  1:369363/140‑1 (MQ=255)
                                                                                                  gCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCt                                    >  2:429051/1‑140 (MQ=255)
                                                                                                  gCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCt                                    >  1:620791/1‑140 (MQ=255)
                                                                                                           ttttttCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTc                           <  2:533005/140‑1 (MQ=255)
                                                                                                           ttttttCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTc                           >  2:1160367/1‑140 (MQ=255)
                                                                                                           ttttttCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTc                           <  1:307821/140‑1 (MQ=255)
                                                                                                              tttCGGCGTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGcc                        <  2:875586/140‑1 (MQ=255)
                                                                                                                     gTACTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGtgat                 <  2:140815/140‑1 (MQ=255)
                                                                                                                       aCTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATTCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGtgatga               >  2:1302655/1‑140 (MQ=255)
                                                                                                                       aCTTTCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGtgatga               >  2:216396/1‑140 (MQ=255)
                                                                                                                           tCCATGAGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGTGATGAGCGt           <  2:27422/140‑1 (MQ=255)
                                                                                                                                 aGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCTCGCAGAATAACTCGCCTCGTGATGAGCGTCAAAAt     <  2:143594/140‑1 (MQ=255)
                                                                                                                                 aGCGCGCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGTGATGAGCGTCAAAAt     <  2:249176/140‑1 (MQ=255)
                                                                                                                                  gcgcgcCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGTGATGAGCGTCAAAATa    >  1:435453/1‑140 (MQ=255)
                                                                                                                                   cgcgCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGTGATGAGCGTCAAAATaa   >  2:303235/1‑140 (MQ=255)
                                                                                                                                   cgcgCCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGTGATGAGCGTCAAAATaa   >  2:206402/1‑140 (MQ=255)
                                                                                                                                    gcgcCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGTGATGAGCGTCAAAATAAg  <  1:75029/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TAAGCGTCATTAGTTGATGGCGCACTGTCTACGCGCCAGATAACGAAAACAAGGGCAACCAGCGCCAACGCAACCACTAACAGAGCAGGGAATTTACTGCGAGGAGCTTTTTTCGGCGTACTTTCCATGAGCGCGTCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGTGATGAGCGTCAAAATAAG  >  NC_000913/4303982‑4304253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A