Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 138 91.1 3071990 99.2% 3047414 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,966,443 A→G D664D (GAT→GAC)  ptsP ← phosphoenolpyruvate‑protein phosphotransferase PtsP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,966,4430AG100.0% 347.6 / NA 100D664D (GAT→GAC) ptsPphosphoenolpyruvate‑protein phosphotransferase PtsP
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (46/54);  total (46/54)

Only 100 of 101 total aligned reads displayed.

GCGCCGCAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGAATGTATTGAGTCAGATCGTTGG  >  NC_000913/2966320‑2966579
                                                                                                                           |                                                                                                                                        
gcgcCGCAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTAttt                                                                                                                          >  1:402183/1‑140 (MQ=255)
 cgccgcAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTc                                                                                                                         <  2:924747/140‑1 (MQ=255)
 cgccgcAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTc                                                                                                                         <  2:573291/140‑1 (MQ=255)
 cgccgcAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTc                                                                                                                         <  2:651191/140‑1 (MQ=255)
    cgcAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGAtt                                                                                                                                    <  2:478133/126‑1 (MQ=255)
    cgcAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGAtt                                                                                                                                    >  1:478133/1‑126 (MQ=255)
    cgcAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTa                                                                                                                             <  2:1405935/133‑1 (MQ=255)
    cgcAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTa                                                                                                                             >  1:1405935/1‑133 (MQ=255)
    cgcAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGc                                                                                                                      >  2:167881/1‑140 (MQ=255)
    cgcAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGc                                                                                                                      >  2:10290/1‑140 (MQ=255)
    cgcAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGc                                                                                                                      >  1:1309480/1‑140 (MQ=255)
    cgcAGCAGGGATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGc                                                                                                                      >  2:331238/1‑140 (MQ=255)
      cagcagGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCtt                                                                                                                    >  1:1155247/1‑140 (MQ=255)
            gTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCggg                                                                                                              <  2:1221400/140‑1 (MQ=255)
            gTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCggg                                                                                                              >  1:639048/1‑140 (MQ=255)
            gTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCggg                                                                                                              <  2:655693/140‑1 (MQ=255)
                   gCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCTATACCCAAGCCCAATGAGGATTGCCACGCACATGGGAGCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGat                                                                                                          <  2:284927/137‑1 (MQ=255)
                   gCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGatcat                                                                                                       >  1:445180/1‑140 (MQ=255)
                   gCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGat                                                                                                          >  1:284927/1‑137 (MQ=255)
                       gcgcTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGcc                                                                                                   <  1:1525813/140‑1 (MQ=255)
                       gcgcTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGcc                                                                                                   >  2:652477/1‑140 (MQ=255)
                        cgcTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCa                                                                                                  <  2:27307/140‑1 (MQ=255)
                        cgcTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCa                                                                                                  <  1:944304/140‑1 (MQ=255)
                        cgcTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCa                                                                                                  <  2:814423/140‑1 (MQ=255)
                        cgcTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCa                                                                                                  <  2:874318/140‑1 (MQ=255)
                         gcTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCag                                                                                                 <  2:157974/140‑1 (MQ=255)
                          cTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCaga                                                                                                <  2:217674/140‑1 (MQ=255)
                             cAGAATGTCCGTTCATACACAGATGGCGATCCCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCt                                                                                             <  2:639048/140‑1 (MQ=255)
                               gAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCg                                                                                           <  1:807873/140‑1 (MQ=255)
                                     ccGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACAt                                                                                     >  1:1070166/1‑140 (MQ=255)
                                     ccGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACAt                                                                                     >  1:686293/1‑140 (MQ=255)
                                     ccGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACAt                                                                                     >  2:551874/1‑140 (MQ=255)
                                       gTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTg                                                                                   <  1:583541/140‑1 (MQ=255)
                                       gTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTg                                                                                   >  2:1344466/1‑140 (MQ=255)
                                       gTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTg                                                                                   >  2:154561/1‑140 (MQ=255)
                                       gTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTg                                                                                   <  1:1500259/140‑1 (MQ=255)
                                        ttaaTAGACAGAGGGCGATACCCAAGCCCAATGAGGTTTGCCACGCACTTGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGc                                                                                  <  2:1144458/137‑1 (MQ=255)
                                        ttCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGc                                                                                  <  1:551466/140‑1 (MQ=255)
                                              gACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATg                                                                            >  1:1395098/1‑140 (MQ=255)
                                               aCAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGa                                                                           >  2:553227/1‑140 (MQ=255)
                                               aCAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGa                                                                           >  1:1513701/1‑140 (MQ=255)
                                                  gATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGa                                                                        <  2:1395098/140‑1 (MQ=255)
                                                  gATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGa                                                                        <  2:1309480/140‑1 (MQ=255)
                                                   aTGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGa                                                                        >  2:864103/1‑139 (MQ=255)
                                                   aTGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGa                                                                        <  1:864103/139‑1 (MQ=255)
                                                   aTGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGAc                                                                       >  2:756245/1‑140 (MQ=255)
                                                   aTGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGAc                                                                       >  1:1169152/1‑140 (MQ=255)
                                                   aTGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGAc                                                                       <  1:154561/140‑1 (MQ=255)
                                                   aTGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGAc                                                                       >  1:1258206/1‑140 (MQ=255)
                                                   aTGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGAc                                                                       >  1:1019977/1‑140 (MQ=255)
                                                    tGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACt                                                                      >  2:376937/1‑140 (MQ=255)
                                                     ggCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTg                                                                     >  1:1250249/1‑140 (MQ=255)
                                                           aCCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATaa                                                               >  1:1326250/1‑140 (MQ=255)
                                                           aCCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATaa                                                               >  1:353427/1‑140 (MQ=255)
                                                            cccAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATaaa                                                              <  1:10290/140‑1 (MQ=255)
                                                               aaGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGAt                                                                             <  1:1345751/122‑1 (MQ=255)
                                                               aaGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGAt                                                                             >  2:1345751/1‑122 (MQ=255)
                                                                aGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGtt                                                          >  1:395342/1‑140 (MQ=255)
                                                                  cccAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCg                                                        <  1:376937/140‑1 (MQ=255)
                                                                     aaTGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCa                                                     <  2:445180/140‑1 (MQ=255)
                                                                     aaTGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCa                                                     <  1:1008062/140‑1 (MQ=255)
                                                                      aTGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCAc                                                    >  2:603722/1‑140 (MQ=255)
                                                                      aTGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCAc                                                    >  2:319033/1‑140 (MQ=255)
                                                                      aTGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCAc                                                    >  2:826674/1‑140 (MQ=255)
                                                                      aTGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCAACGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCAc                                                    <  2:899140/140‑1 (MQ=255)
                                                                       tGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCAcc                                                   <  2:353427/140‑1 (MQ=255)
                                                                       tGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCAcc                                                   >  2:585724/1‑140 (MQ=255)
                                                                       tGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCAcc                                                   >  1:495089/1‑140 (MQ=255)
                                                                          ggATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCgg                                                <  1:652477/140‑1 (MQ=255)
                                                                           gATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCggg                                               >  2:1046851/1‑140 (MQ=255)
                                                                           gATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCggg                                               <  2:686293/140‑1 (MQ=255)
                                                                            aTTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGt                                              <  2:402183/140‑1 (MQ=255)
                                                                             ttGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTa                                             <  2:1155247/140‑1 (MQ=255)
                                                                             ttGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTa                                             <  2:1226464/140‑1 (MQ=255)
                                                                                 cACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCTCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGtt                                                          >  2:1006680/1‑123 (MQ=255)
                                                                                 cACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCTCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGtt                                                          <  1:1006680/123‑1 (MQ=255)
                                                                                          gggATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCaa                                >  2:1343876/1‑140 (MQ=255)
                                                                                          gggATCGCCCACCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTACTGTTGCGATCaa                                <  2:427135/140‑1 (MQ=255)
                                                                                           ggATCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAAc                               <  1:1046851/140‑1 (MQ=255)
                                                                                             aTCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACgg                             <  1:826674/140‑1 (MQ=255)
                                                                                             aTCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACgg                             <  1:1344466/140‑1 (MQ=255)
                                                                                             aTCGCCCGCCATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACgg                             <  2:1326250/140‑1 (MQ=255)
                                                                                               cgcccgccATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGcc                           <  2:1169152/140‑1 (MQ=255)
                                                                                                gcccgccATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCa                          >  2:147631/1‑140 (MQ=255)
                                                                                                 cccgccATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAg                         <  1:603722/140‑1 (MQ=255)
                                                                                                  ccgccATTTCACCGCACAAACGGAGGTTGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGa                        >  1:1497467/1‑140 (MQ=255)
                                                                                                  ccgccATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACgg                             >  1:242453/1‑135 (MQ=255)
                                                                                                  ccgccATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACgg                             <  2:242453/135‑1 (MQ=255)
                                                                                                  ccgccATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGa                        >  2:705444/1‑140 (MQ=255)
                                                                                                  ccgccATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGa                        <  1:137110/140‑1 (MQ=255)
                                                                                                  ccgccATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGa                        >  2:782710/1‑140 (MQ=255)
                                                                                                   cgccATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGaa                       <  1:331238/140‑1 (MQ=255)
                                                                                                   cgccATTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGaa                       <  1:1190634/140‑1 (MQ=255)
                                                                                                       aTTTCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGAATGTa                   <  2:395342/140‑1 (MQ=255)
                                                                                                         ttCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGcc                           >  1:42191/1‑130 (MQ=255)
                                                                                                         ttCACCGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGcc                           <  2:42191/130‑1 (MQ=255)
                                                                                                              cGCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGAATGTATTGAGTc            <  1:645607/140‑1 (MQ=255)
                                                                                                               gCACAAACGGAGGTTGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGAATGTATTGAGTCa           <  2:1497467/140‑1 (MQ=255)
                                                                                                               gCACAAACGGAGGTCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGAATGTATTGAGTCa           <  2:495089/140‑1 (MQ=255)
                                                                                                                        gaggTCGATTCCATGTATTTCCGCTTCCCGGGTGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGAATGTATTGAGTCAGATCGTTgg  <  1:167881/140‑1 (MQ=255)
                                                                                                                           |                                                                                                                                        
GCGCCGCAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTCCGCTTCCCGGGCGATCATCGCCAGAGCTCGTAACATTGCAGGATGAAGACTGTCATAAATGTTCGCCACCCGGGTATTGTTGCGATCAACGGCCAGAATGTATTGAGTCAGATCGTTGG  >  NC_000913/2966320‑2966579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A