Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	138	91.1	3071990	99.2%	3047414	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,109,036	A→G	A40A (GCT→GCC)	speC ←	ornithine decarboxylase, biosynthetic

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,109,036	0	A	G	100.0%	282.9 / NA	80	A40A (GCT→GCC)	speC	ornithine decarboxylase, biosynthetic
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (45/35); total (45/35)

GCCACTGCTGCTCGTTGCCGTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCAGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTC  >  NC_000913/3108900‑3109172

gcccatgctgcTCGTTGCCTTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCgcggcg                                                                                                                                       <  1:1078615/135‑1 (MQ=255)

gcCACTGCTGCTCGTTGCCGTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCgcggcg                                                                                                                                       >  1:606847/1‑140 (MQ=255)

gcCACTGCTGCTCGTTGCCGTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCgcggcg                                                                                                                                       >  2:1076915/1‑140 (MQ=255)

   cctgctgCTCGTTGCCGTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTa                                                                                                                                    <  1:1306534/139‑1 (MQ=255)

   aCTGCTGCTCGTTGCCGTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTa                                                                                                                                    <  1:314801/140‑1 (MQ=255)

   aCTGCTGCTCGTTGCCGTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTa                                                                                                                                    <  2:687651/140‑1 (MQ=255)

        tgctCGTTGCCGTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATgac                                                                                                                               <  2:160601/140‑1 (MQ=255)

          ctCGTTGCCGTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATgacga                                                                                                                             >  1:1328261/1‑140 (MQ=255)

              ttGCCGTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGc                                                                                                                         >  1:195010/1‑140 (MQ=255)

                 ccGTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCcgc                                                                                                                      >  1:782379/1‑140 (MQ=255)

                   gTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGa                                                                                                                    <  1:1119313/140‑1 (MQ=255)

                         tACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCg                                                                                                              <  1:940038/140‑1 (MQ=255)

                         tACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCg                                                                                                              >  1:302103/1‑140 (MQ=255)

                                 tAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATGCAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTa                                                                                                            <  2:1430195/134‑1 (MQ=255)

                                 tAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTGCGTa                                                                                                            >  1:1430195/1‑134 (MQ=255)

                                   aCGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGt                                                                                                    >  1:481708/1‑140 (MQ=255)

                                       ccGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTAtct                                                                                                <  1:1474218/140‑1 (MQ=255)

                                        cGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTAtctc                                                                                               >  1:825942/1‑140 (MQ=255)

                                                 ttCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTAtct                                                                                                >  1:999187/1‑130 (MQ=255)

                                                 ttCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTAtct                                                                                                <  2:999187/130‑1 (MQ=255)

                                                 ttCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGcca                                                                                      >  1:701850/1‑140 (MQ=255)

                                                 ttCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGcca                                                                                      <  1:1178852/140‑1 (MQ=255)

                                                     aCAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCcaccac                                                                                  >  1:355136/1‑140 (MQ=255)

                                                      cAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCAcg                                                                                 <  2:302103/140‑1 (MQ=255)

                                                      cAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCAcg                                                                                 <  2:1114614/140‑1 (MQ=255)

                                                       aGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCAcgc                                                                                >  2:1164040/1‑140 (MQ=255)

                                                       aGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCAcgc                                                                                >  1:560834/1‑140 (MQ=255)

                                                       aGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACAGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCAcgc                                                                                >  1:1267497/1‑140 (MQ=255)

                                                        gCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCAcgcg                                                                               <  2:606847/140‑1 (MQ=255)

                                                         cATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGcga                                                                              >  2:492644/1‑140 (MQ=255)

                                                         cATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGcga                                                                              >  1:1125868/1‑140 (MQ=255)

                                                         cATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGcga                                                                              >  1:367719/1‑140 (MQ=255)

                                                          aTGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGcgac                                                                             <  2:1472277/140‑1 (MQ=255)

                                                           tGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGcgacg                                                                            >  1:231975/1‑140 (MQ=255)

                                                           tGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGcgacg                                                                            >  2:1255007/1‑140 (MQ=255)

                                                             ttCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGAt                                                                          <  1:306722/140‑1 (MQ=255)

                                                              tCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATg                                                                         >  1:242512/1‑140 (MQ=255)

                                                                ggAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATgag                                                                       >  2:562497/1‑140 (MQ=255)

                                                                   aTACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGagaag                                                                    >  1:231535/1‑140 (MQ=255)

                                                                          aaCACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCg                                                             <  2:825942/140‑1 (MQ=255)

                                                                           acacCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCgg                                                            <  2:1125868/140‑1 (MQ=255)

                                                                              ccGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGAt                                                         <  1:641867/140‑1 (MQ=255)

                                                                              ccGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGAt                                                         >  1:1323687/1‑140 (MQ=255)

                                                                               cGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATa                                                        >  1:120108/1‑140 (MQ=255)

                                                                                ggTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGagaa                                                                     >  1:37426/1‑126 (MQ=255)

                                                                                ggTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGagaa                                                                     <  2:37426/126‑1 (MQ=255)

                                                                                ggTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATAc                                                       <  2:367719/140‑1 (MQ=255)

                                                                                ggTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATAc                                                       <  1:982235/140‑1 (MQ=255)

                                                                                 gTAGATGAGAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATAcc                                                      >  2:564130/1‑140 (MQ=255)

                                                                                 gTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCgg                                                            <  1:1507578/134‑1 (MQ=255)

                                                                                 gTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCgg                                                            >  2:1507578/1‑134 (MQ=255)

                                                                                 gTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATAc                                                       >  1:186391/1‑139 (MQ=255)

                                                                                 gTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATAc                                                       <  2:186391/139‑1 (MQ=255)

                                                                                 gTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATAc                                                       >  2:1450438/1‑139 (MQ=255)

                                                                                 gTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATAc                                                       <  1:1450438/139‑1 (MQ=255)

                                                                                         aaaCCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCact                                              <  2:560834/140‑1 (MQ=255)

                                                                                         aaaCCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTAGGGATACCAGTTCact                                              >  2:776813/1‑140 (MQ=255)

                                                                                          aaCCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCacta                                             <  2:481708/140‑1 (MQ=255)

                                                                                            ccGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCTGGATACCAGTTCactact                                           >  1:85437/1‑140 (MQ=255)

                                                                                            ccGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCTGGATACCAGTTCactact                                           <  2:85437/140‑1 (MQ=255)

                                                                                            ccGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCactact                                           <  1:1255007/140‑1 (MQ=255)

                                                                                              ggTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTgg                                         <  1:1164040/140‑1 (MQ=255)

                                                                                              ggTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTgg                                         <  2:355136/140‑1 (MQ=255)

                                                                                               gTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTggc                                        >  2:671543/1‑140 (MQ=255)

                                                                                                tGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTggcg                                       >  1:208052/1‑140 (MQ=255)

                                                                                                    cTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACAAGTTCACTACTGGCGGCaa                                   <  1:492644/140‑1 (MQ=255)

                                                                                                       aaGCAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAatat                                >  2:145810/1‑140 (MQ=255)

                                                                                                          cAACGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCa                             <  1:145810/140‑1 (MQ=255)

                                                                                                             cGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTg                          >  1:1191975/1‑140 (MQ=255)

                                                                                                             cGCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTg                          >  1:782125/1‑140 (MQ=255)

                                                                                                              gCAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGa                         >  2:1216466/1‑140 (MQ=255)

                                                                                                               cAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTgg                                         <  2:1527901/123‑1 (MQ=255)

                                                                                                               cAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTgg                                         <  1:704672/123‑1 (MQ=255)

                                                                                                               cAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTgg                                         >  2:704672/1‑123 (MQ=255)

                                                                                                               cAAGAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTgg                                         >  1:1527901/1‑123 (MQ=255)

                                                                                                                  gAATGCCACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTc                     >  1:1338969/1‑140 (MQ=255)

                                                                                                                       ccACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGAt                        <  2:1479964/132‑1 (MQ=255)

                                                                                                                       ccACTGCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGAt                        >  1:1479964/1‑132 (MQ=255)

                                                                                                                            gCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAGTATTCATTGATTTCATAAGCGCaa           >  1:108027/1‑140 (MQ=255)

                                                                                                                            gCGACTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCaa           >  1:568434/1‑140 (MQ=255)

                                                                                                                                cTATCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAAccc       >  1:86833/1‑140 (MQ=255)

                                                                                                                                   tCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGtt    >  1:182082/1‑140 (MQ=255)

                                                                                                                                   tCCGCGGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGtt    >  1:262302/1‑140 (MQ=255)

                                                                                                                                     cgcgGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTc  <  1:562497/140‑1 (MQ=255)

GCCACTGCTGCTCGTTGCCGTTGATTACCGCCGTAACGCCCGCAGGTAATTCAACAGCATGTTCGGAATACAAAAACACCGGTAGATGAAAACCGGTGCGCTTAAGCAACGCAAGAATGCCACTGCGACTATCCGCAGCGGTAATGACGACTGCCGCGACGTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTC  >  NC_000913/3108900‑3109172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A