Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 138 91.1 3071990 99.2% 3047414 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,419,982 T→C pseudogene (941/1025 nt) yhdW → putative ABC transporter periplasmic binding protein YhdW

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,419,9820TC100.0% 307.0 / NA 87pseudogene (941/1025 nt)yhdWputative ABC transporter periplasmic binding protein YhdW
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (49/38);  total (49/38)

CCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTT  >  NC_000913/3419854‑3420115
                                                                                                                                |                                                                                                                                     
ccTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGccc                                                                                                                            >  2:877711/1‑140 (MQ=255)
 cTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCg                                                                                                                           >  1:1458816/1‑140 (MQ=255)
  tGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGc                                                                                                                          <  1:16828/140‑1 (MQ=255)
    atatGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTg                                                                                                                        >  2:969273/1‑140 (MQ=255)
    atatGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTg                                                                                                                        <  2:1458816/140‑1 (MQ=255)
        ggCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGaaaa                                                                                                                    >  2:143335/1‑140 (MQ=255)
          cacaTCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAAtt                                                                                                                  >  2:1174035/1‑140 (MQ=255)
              tCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAAc                                                                                                              >  2:107917/1‑140 (MQ=255)
                 gctgGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTg                                                                                                           <  1:1412238/140‑1 (MQ=255)
                  ctgGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTgg                                                                                                          >  2:817402/1‑140 (MQ=255)
                  ctgGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTgg                                                                                                          >  1:1382926/1‑140 (MQ=255)
                   tgGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTggg                                                                                                         <  1:877711/140‑1 (MQ=255)
                   tgGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTggg                                                                                                         <  1:303805/140‑1 (MQ=255)
                   tgGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTgg                                                                                                          >  2:892908/1‑139 (MQ=255)
                   tgGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTgg                                                                                                          <  1:892908/139‑1 (MQ=255)
                    gggTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGc                                                                                                        <  2:840566/140‑1 (MQ=255)
                        aaaGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCaaaa                                                                                                    <  2:1382926/140‑1 (MQ=255)
                            aagGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAaataat                                                                                                <  1:817402/140‑1 (MQ=255)
                               gCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAAtctc                                                                                             >  2:1360423/1‑140 (MQ=255)
                               gCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAAtctc                                                                                             >  1:161479/1‑140 (MQ=255)
                               gCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAAtctc                                                                                             >  2:302414/1‑140 (MQ=255)
                               gCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAAtctc                                                                                             >  1:774905/1‑140 (MQ=255)
                                   ttACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGa                                                                                         >  2:792559/1‑140 (MQ=255)
                                          aaGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAAcgg                                                                                  <  1:792559/140‑1 (MQ=255)
                                              aTCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGt                                                                              <  1:514121/140‑1 (MQ=255)
                                              aTCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGt                                                                              <  1:969273/140‑1 (MQ=255)
                                              aTCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGt                                                                              <  1:745283/140‑1 (MQ=255)
                                                cTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTAt                                                                            <  1:1174035/140‑1 (MQ=255)
                                                cTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTAt                                                                            <  1:1360423/140‑1 (MQ=255)
                                                 tGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTAtt                                                                           <  1:790025/140‑1 (MQ=255)
                                                 tGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTAtt                                                                           >  2:790025/1‑140 (MQ=255)
                                                  gAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAGCGGCGGTATTc                                                                          <  1:143335/140‑1 (MQ=255)
                                                    aGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAg                                                                        <  2:464839/140‑1 (MQ=255)
                                                        ggATAATAAATGGGCCTTTAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACg                                                                    >  1:1405498/1‑140 (MQ=255)
                                                        ggATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAAcggcg                                                                                <  1:3875/128‑1 (MQ=255)
                                                        ggATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAAcggcg                                                                                >  2:3875/1‑128 (MQ=255)
                                                        ggATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACg                                                                    >  2:26349/1‑140 (MQ=255)
                                                        ggATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACg                                                                    >  2:1130390/1‑140 (MQ=255)
                                                        ggATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACg                                                                    >  1:1210120/1‑140 (MQ=255)
                                                        ggATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACg                                                                    >  2:1036337/1‑140 (MQ=255)
                                                        ggATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAACGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACg                                                                    >  1:601511/1‑140 (MQ=255)
                                                         gATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGc                                                                   >  2:228678/1‑140 (MQ=255)
                                                          ataataAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCa                                                                  >  1:910906/1‑140 (MQ=255)
                                                          ataataAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCACTACGcc                                                                  >  2:487075/1‑139 (MQ=255)
                                                                aaTGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGccc                                                            <  2:1490629/140‑1 (MQ=255)
                                                                aaTGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGccc                                                            <  1:107917/140‑1 (MQ=255)
                                                                   gggCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTg                                                         >  2:1222256/1‑140 (MQ=255)
                                                                    ggCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTAAGCACCCCCCgcgc                                                        >  2:1104904/1‑140 (MQ=255)
                                                                     gCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCg                                                       >  1:289967/1‑140 (MQ=255)
                                                                        tataACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTTAATAAGCACCCCCCCCGCGTTa                                                    >  2:1200580/1‑140 (MQ=255)
                                                                         ataACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTaa                                                   <  1:228678/140‑1 (MQ=255)
                                                                          taACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAg                                                  <  1:1130390/140‑1 (MQ=255)
                                                                          taACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAg                                                  <  2:774905/140‑1 (MQ=255)
                                                                          taACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGGATTCAGTACGCCCCGCCCGTGCGGTaaa                                                  >  2:921089/1‑139 (MQ=255)
                                                                           aaCATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGt                                                 <  2:161479/140‑1 (MQ=255)
                                                                               tcatcaAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATGTCTGGAATAACGGCGGTATTTAGTACGCACCCCCCGTGCGTTTAGTCggg                                             >  2:1372280/1‑139 (MQ=255)
                                                                               tcatcaAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGgt                                             <  1:1036337/140‑1 (MQ=255)
                                                                               tcatcaAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGgt                                             <  1:26349/140‑1 (MQ=255)
                                                                               tcatcaAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGgt                                             <  1:795185/140‑1 (MQ=255)
                                                                               tcatcaAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGgt                                             <  2:127686/140‑1 (MQ=255)
                                                                                catcaAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTTAGTACGCACCCCCCCTGCGTTAAGTCgggg                                            >  2:1128756/1‑138 (MQ=255)
                                                                                catcaAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCCGGCGTTAAGTCgggg                                            >  2:426353/1‑138 (MQ=255)
                                                                                catcaAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGGATTCAGTACGCACCCCCCCCGCGCTAAGACgggg                                            >  2:700327/1‑138 (MQ=255)
                                                                                 atcaAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCggggg                                           >  2:62209/1‑137 (MQ=255)
                                                                                 atcaAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGgtgt                                           >  1:590262/1‑140 (MQ=255)
                                                                                  tcaAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAATACACACCCCCCCCGCGTTAAGTCgcggtg                                          >  2:1409728/1‑135 (MQ=255)
                                                                                       cAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTa                                     <  1:302414/140‑1 (MQ=255)
                                                                                        aGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTaa                                    >  1:898125/1‑140 (MQ=255)
                                                                                        aGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAATACGCACCGCCCCTGCGTTAAGTCCGTGTGAGGTaa                                    >  2:795185/1‑140 (MQ=255)
                                                                                          gTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCg                                               <  1:1394875/127‑1 (MQ=255)
                                                                                          gTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCg                                               >  2:1394875/1‑127 (MQ=255)
                                                                                          gTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACg                                  >  2:54538/1‑140 (MQ=255)
                                                                                            gggTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAg                                <  2:1210120/140‑1 (MQ=255)
                                                                                            gggTAACTACTCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGGGTGAGGGAAagag                                >  1:1492201/1‑140 (MQ=255)
                                                                                                  ctactCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGGAATCAGTACGCACCGCCCGGGCGTCAAGTTGGTGTGAGGGAACGCACGTCGc                          >  2:346372/1‑140 (MQ=255)
                                                                                                    actCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCTAAATAATTTCTGGAATAACGGCGGCGGTTAGTAAGATCCGCCCGTTTCTTAACTGGTTTTGAGATAAAGAGCgccagca                        >  2:198483/1‑134 (MQ=255)
                                                                                                    actCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCCCGCGTTAAGTCGGGGGGGGGGAACGAGCGTCGcca                        >  2:444211/1‑138 (MQ=255)
                                                                                                     ctCGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTTAGTACGCACCGCCCCTGAGGTAAGGCGGTGTGAGGGAACGAGCGGCGCTAc                       >  2:890754/1‑140 (MQ=255)
                                                                                                       cGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGGAACGAGCGTCGCTAcgg                     >  1:930098/1‑140 (MQ=255)
                                                                                                       cGGAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGGAACGAGCGTCGCTAcgg                     >  1:577399/1‑140 (MQ=255)
                                                                                                         gAAATTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTAcggcg                   <  1:1409728/140‑1 (MQ=255)
                                                                                                            aTTTTTGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGgcggcg                <  2:898125/140‑1 (MQ=255)
                                                                                                             tttttGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCCCCCCTGCGTTAAGTCGGGGTGGGGGAACGAGCGTCGCTACGGCGgcgc               >  2:1460881/1‑140 (MQ=255)
                                                                                                              ttttGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGct              <  1:346372/140‑1 (MQ=255)
                                                                                                              ttttGAGCGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGct              <  1:54538/140‑1 (MQ=255)
                                                                                                                     cGTAACGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCa       <  1:890754/140‑1 (MQ=255)
                                                                                                                          cGTAGGCTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGtt  <  2:590262/140‑1 (MQ=255)
                                                                                                                                |                                                                                                                                     
CCTGATATGGCACATCTGCTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGCTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGGGTAACTACTCGGAAATTTTTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGAATAACGGCGGTATTCAGTACGCACCGCCCGTGCGTTAAGTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTT  >  NC_000913/3419854‑3420115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A