Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	138	91.1	3071990	99.2%	3047414	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,610,564	(T)_7→6	coding (1170/1218 nt)	yhhS ←	putative transporter YhhS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,610,558	0	T	.	100.0%	290.2 / NA	70	coding (1176/1218 nt)	yhhS	putative transporter YhhS
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (34/36); total (34/36)

ACTGCTGACCATGCAAATTACGCTGCCCGCTGACGATCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCGTTTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGTCCAGTCACGCCAAGCGATAAATCCATAAAT  >  NC_000913/3610419‑3610693

aCTGCTGACCATGCAAATTACGCTGCCCGCTGACGATCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCGt                                                                                                                                         >  1:655212/1‑140 (MQ=255)

    ctgACCATGCAAATTACGCTGCCCGCTGACGATCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCGttttt                                                                                                                                     >  1:1465849/1‑140 (MQ=255)

       aCCATGCAAATTACGCTGCCCGCTGACGATCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCGttttttaa                                                                                                                                  >  1:1067629/1‑138 (MQ=255)

           tGCAAATTACGCTGCCCGCTGACGATCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGc                                                                                                                             <  2:85724/140‑1 (MQ=255)

           tGCAAATTACGCTGCCCGCTGACGATCAGCAAAAAGCGCAGAATACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGc                                                                                                                             <  2:1420979/140‑1 (MQ=255)

            gCAAATTACGCTGCCCGCTGACGATCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGcc                                                                                                                            <  2:1402413/140‑1 (MQ=255)

              aaaTTACGCTGCCCGCTGACGATCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATAGCCAc                                                                                                                          <  2:771159/140‑1 (MQ=255)

                aTTACGCTGCCCGCTGACGATCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGt                                                                                                                        <  1:245189/140‑1 (MQ=255)

                   aCGCTGCCCGCTGACGATCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAg                                                                                                                     >  2:386181/1‑140 (MQ=255)

                         cccGCTGACGATCAGCAACAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGtaataa                                                                                                               >  1:927512/1‑140 (MQ=255)

                                   aTCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCg                                                                                                     >  2:638913/1‑140 (MQ=255)

                                   aTCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCg                                                                                                     >  1:1211874/1‑140 (MQ=255)

                                   aTCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCg                                                                                                     >  1:1166713/1‑140 (MQ=255)

                                          aaaaGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTc                                                                                              <  1:386181/140‑1 (MQ=255)

                                               cgcAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCccgcc                                                                                         >  2:442068/1‑140 (MQ=255)

                                                gcAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGAtt                                                                                                        <  2:608069/124‑1 (MQ=255)

                                                gcAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGAtt                                                                                                        >  1:1193119/1‑124 (MQ=255)

                                                gcAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGAtt                                                                                                        <  2:1193119/124‑1 (MQ=255)

                                                gcAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGAtt                                                                                                        >  1:608069/1‑124 (MQ=255)

                                                 cAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAGGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCccgccgc                                                                                       <  1:324414/140‑1 (MQ=255)

                                                    accaccGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCcgccgccgc                                                                                    >  2:869041/1‑140 (MQ=255)

                                                           cAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATaa                                                                             >  2:1158318/1‑140 (MQ=255)

                                                              aaaaCATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATc                                                                          >  1:1362116/1‑140 (MQ=255)

                                                              aaaaCATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATc                                                                          >  2:1362807/1‑140 (MQ=255)

                                                                aaCATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCAc                                                                        >  2:609960/1‑140 (MQ=255)

                                                                   atcatTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCgg                                                                     <  2:1094398/140‑1 (MQ=255)

                                                                   atcatTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCgg                                                                     <  2:927512/140‑1 (MQ=255)

                                                                   atcatTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCgg                                                                     >  1:652636/1‑140 (MQ=255)

                                                                     catTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTa                                                                   <  2:1211874/140‑1 (MQ=255)

                                                                     catTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTa                                                                   >  2:615476/1‑140 (MQ=255)

                                                                          aTACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTAcgccc                                                              <  2:1166713/140‑1 (MQ=255)

                                                                             cGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTAcgcccgcc                                                           <  2:1230397/140‑1 (MQ=255)

                                                                             cGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTAcgcccgcc                                                           >  1:41467/1‑140 (MQ=255)

                                                                             cGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTAcgcccgcc                                                           >  1:146604/1‑140 (MQ=255)

                                                                               cTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTAcgc                                                                <  1:711280/133‑1 (MQ=255)

                                                                               cTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTAcgc                                                                >  2:711280/1‑133 (MQ=255)

                                                                               cTGGTTATTCAGTAAGTCTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACgcccgccc                                                          >  2:1121622/1‑139 (MQ=255)

                                                                               cTGGTTATTCAGTAAGTCTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACgcccgccc                                                          <  1:1121622/139‑1 (MQ=255)

                                                                                 ggTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGc                                                       >  1:1501798/1‑140 (MQ=255)

                                                                                 ggTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGc                                                       >  2:1529524/1‑140 (MQ=255)

                                                                                  gTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCt                                                      >  1:915064/1‑140 (MQ=255)

                                                                                   ttATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCtc                                                     <  1:638913/140‑1 (MQ=255)

                                                                                     aTTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCtcat                                                   <  1:442068/140‑1 (MQ=255)

                                                                                       tCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCtcatca                                                 <  1:1158318/140‑1 (MQ=255)

                                                                                       tCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCtcatca                                                 >  1:1016709/1‑140 (MQ=255)

                                                                                       tCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCtcatca                                                 <  1:895899/140‑1 (MQ=255)

                                                                                        cAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCAc                                                <  1:615476/140‑1 (MQ=255)

                                                                                            aaGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTAcgcccgcc                                                           <  1:528048/125‑1 (MQ=255)

                                                                                            aaGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTAcgcccgcc                                                           >  2:528048/1‑125 (MQ=255)

                                                                                            aaGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCt                                                      >  1:1098897/1‑130 (MQ=255)

                                                                                            aaGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCt                                                      <  2:1098897/130‑1 (MQ=255)

                                                                                            aaGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCAccagc                                            >  1:642743/1‑140 (MQ=255)

                                                                                            aaGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCAccagc                                            >  2:1107389/1‑140 (MQ=255)

                                                                                            aaGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGGCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCAccagc                                            >  2:103457/1‑140 (MQ=255)

                                                                                               ttttAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCAccagccca                                         <  2:652636/140‑1 (MQ=255)

                                                                                               ttttAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCAccagccca                                         <  2:1501798/140‑1 (MQ=255)

                                                                                                   aaGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCccagcca                                     <  2:146604/140‑1 (MQ=255)

                                                                                                   aaGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCccagcca                                     <  2:1016709/140‑1 (MQ=255)

                                                                                                    aGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCccagccag                                    <  2:204732/140‑1 (MQ=255)

                                                                                                    aGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCccagccag                                    <  2:642743/140‑1 (MQ=255)

                                                                                                       tgatgaGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTgg                                 <  2:1362116/140‑1 (MQ=255)

                                                                                                        gatgaGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGt                                <  2:41467/140‑1 (MQ=255)

                                                                                                        gatgaGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGt                                <  1:869041/140‑1 (MQ=255)

                                                                                                         atgaGGCGGCCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGTc                               >  1:1397074/1‑140 (MQ=255)

                                                                                                              gcggcCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGTCCAGt                           >  2:850485/1‑139 (MQ=255)

                                                                                                              gcggcCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGTCCAGt                           <  1:850485/139‑1 (MQ=255)

                                                                                                                ggcCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGTCCAGTCAc                        >  2:136092/1‑140 (MQ=255)

                                                                                                                 gcCTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGTCCAGTCACg                       >  1:29504/1‑140 (MQ=255)

                                                                                                                   cTCAGGGACGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGTCCAGTCACGcc                     >  2:1298153/1‑140 (MQ=255)

                                                                                                                          aCGTGTTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGTCCAGTCACGCCAAGCGAt              <  2:655212/140‑1 (MQ=255)

                                                                                                                             tgtTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGTCCAGTCACGCCAAGCGATaaa           <  1:136092/140‑1 (MQ=255)

                                                                                                                              gtTCCGGAGGCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGTCCAGTCACGCCAAGCGATAAAt          >  1:1419872/1‑140 (MQ=255)

                                                                                                                                      ggCCG‑TTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGTCCAGTCACGCCAAGCGATAAATCCATAAAt  <  2:29504/140‑1 (MQ=255)

ACTGCTGACCATGCAAATTACGCTGCCCGCTGACGATCAGCAAAAAGCGCAGACCACCGCAGAAAACATCATTAATACGCTGGTTATTCAGTAAGTTTTAAGATGATGAGGCGGCCTCAGGGACGTGTTCCGGAGGCCGTTTTTTTAATCGCCACGTCAGTAATAACGCGATTGCGACCAGTCCCGCCGCCGCCAGATAAATCACCGGTACGCCCGCCCAGCTCATCACCAGCCCAGCCAGTGGTCCAGTCACGCCAAGCGATAAATCCATAAAT  >  NC_000913/3610419‑3610693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A