Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	128	54.7	1845674	99.3%	1832754	139.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,943,150	T→C	intergenic (‑5/‑187)	ygdI ← / → csdA	DUF903 domain‑containing lipoprotein YgdI/cysteine sulfinate desulfinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,943,150	0	T	C	100.0%	283.3 / NA	77	intergenic (‑5/‑187)	ygdI/csdA	DUF903 domain‑containing lipoprotein YgdI/cysteine sulfinate desulfinase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (28/49); total (28/49)

ATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTGATGGTTAGCACT  >  NC_000913/2943014‑2943279

aTCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCAtcctct                                                                                                                                >  1:175972/1‑140 (MQ=255)

     tCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTa                                                                                                                           >  1:235592/1‑140 (MQ=255)

     tCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTa                                                                                                                           >  1:22002/1‑140 (MQ=255)

       tgtgGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTaaa                                                                                                                         >  1:20693/1‑140 (MQ=255)

        gtgGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAg                                                                                                                        <  1:39542/140‑1 (MQ=255)

         tgGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGc                                                                                                                       >  1:601081/1‑140 (MQ=255)

         tgGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGc                                                                                                                       >  2:408075/1‑140 (MQ=255)

         tgGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGc                                                                                                                       >  1:144193/1‑140 (MQ=255)

          ggTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCg                                                                                                                      <  1:299401/140‑1 (MQ=255)

           gTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGa                                                                                                                     <  2:168540/140‑1 (MQ=255)

              tGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATta                                                                                                                  >  1:127590/1‑140 (MQ=255)

              tGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATta                                                                                                                  >  1:419988/1‑140 (MQ=255)

               gCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATtaa                                                                                                                 >  2:881830/1‑140 (MQ=255)

                    cAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAAt                                                                                                            <  2:175972/140‑1 (MQ=255)

                    cAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAAt                                                                                                            <  2:235592/140‑1 (MQ=255)

                         aCGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTaa                                                                                                       <  1:176078/140‑1 (MQ=255)

                         aCGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTaa                                                                                                       <  2:402518/140‑1 (MQ=255)

                         aCGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTaa                                                                                                       <  1:408075/140‑1 (MQ=255)

                              ggTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTa                                                                                                  <  1:910843/140‑1 (MQ=255)

                              ggTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTa                                                                                                  <  2:191739/140‑1 (MQ=255)

                               gTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTAt                                                                                                 >  2:655400/1‑140 (MQ=255)

                                      cgtcATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTaa                                                                                          <  2:911591/140‑1 (MQ=255)

                                          aTTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAgg                                                                                      >  2:742787/1‑140 (MQ=255)

                                            tGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCt                                                                                    <  1:106855/140‑1 (MQ=255)

                                             ggTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTa                                                                                   >  1:613992/1‑140 (MQ=255)

                                              gtgtGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTaa                                                                                  >  1:443926/1‑140 (MQ=255)

                                                   cATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTa                                                                             >  1:475288/1‑140 (MQ=255)

                                                   cATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTa                                                                             <  2:419988/140‑1 (MQ=255)

                                                   cATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTa                                                                             <  1:528359/140‑1 (MQ=255)

                                                   cATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTa                                                                             >  1:756203/1‑140 (MQ=255)

                                                    aTCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTaa                                                                            <  2:144193/140‑1 (MQ=255)

                                                        caTAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGcc                                                                        >  2:153260/1‑140 (MQ=255)

                                                        caTAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGcc                                                                        <  1:533908/140‑1 (MQ=255)

                                                        caTAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGcc                                                                        <  2:22002/140‑1 (MQ=255)

                                                        caTAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGcc                                                                        >  1:232464/1‑140 (MQ=255)

                                                           aGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTaa                                                                     <  1:793942/140‑1 (MQ=255)

                                                             ttCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACg                                                                          >  1:655729/1‑133 (MQ=255)

                                                             ttCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACg                                                                          <  2:655729/133‑1 (MQ=255)

                                                             ttCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAaca                                                                   >  1:447786/1‑140 (MQ=255)

                                                             ttCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAaca                                                                   >  1:375240/1‑140 (MQ=255)

                                                             ttCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAaca                                                                   <  2:646495/140‑1 (MQ=255)

                                                             ttCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAaca                                                                   <  1:608429/140‑1 (MQ=255)

                                                             ttCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAaca                                                                   >  2:474806/1‑140 (MQ=255)

                                                             ttCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAaca                                                                   <  1:490120/140‑1 (MQ=255)

                                                             ttCGAACCGGAACAGGCGCTCAGGACAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAaca                                                                   >  2:137168/1‑140 (MQ=255)

                                                                gAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTaa                                                                     <  2:379587/135‑1 (MQ=255)

                                                                gAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTaa                                                                     >  1:379587/1‑135 (MQ=255)

                                                                gAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTa                                                                <  2:20693/140‑1 (MQ=255)

                                                                gAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTa                                                                <  1:920/140‑1 (MQ=255)

                                                                 aaCCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTAt                                                               >  2:42177/1‑140 (MQ=255)

                                                                  aCCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTAtt                                                              >  1:824484/1‑140 (MQ=255)

                                                                  aCCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTAtt                                                              <  1:153260/140‑1 (MQ=255)

                                                                     ggAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAg                                                           <  2:622606/140‑1 (MQ=255)

                                                                      gAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGc                                                          <  1:742787/140‑1 (MQ=255)

                                                                       aaCAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCa                                                         <  1:655400/140‑1 (MQ=255)

                                                                       aaCAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCa                                                         <  2:447786/140‑1 (MQ=255)

                                                                                 cAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCa                                                         >  2:69386/1‑130 (MQ=255)

                                                                                 cAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCa                                                         <  1:69386/130‑1 (MQ=255)

                                                                                      cAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTAcgcg                                          <  1:512121/140‑1 (MQ=255)

                                                                                       aaaaGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCgg                                         <  2:83437/140‑1 (MQ=255)

                                                                                       aaaaGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCgg                                         <  2:443926/140‑1 (MQ=255)

                                                                                        aaaGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGc                                        <  1:901028/140‑1 (MQ=255)

                                                                                        aaaGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGc                                        <  2:375240/140‑1 (MQ=255)

                                                                                        aaaGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGc                                        <  1:42177/140‑1 (MQ=255)

                                                                                            tCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCg                                    <  1:340250/140‑1 (MQ=255)

                                                                                            tCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCg                                    <  1:139204/140‑1 (MQ=255)

                                                                                            tCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTACTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCg                                    <  2:824484/140‑1 (MQ=255)

                                                                                                     aGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGatat                           >  2:189558/1‑140 (MQ=255)

                                                                                                           aaaTAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGAt                     <  2:855189/140‑1 (MQ=255)

                                                                                                           aaaTAATTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGAt                     <  2:75575/140‑1 (MQ=255)

                                                                                                               aatTGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAAtt                 <  2:127590/140‑1 (MQ=255)

                                                                                                                 ttGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCt               >  1:513909/1‑140 (MQ=255)

                                                                                                                  tGCGGCAGTCTTTTTCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTg              <  2:232464/140‑1 (MQ=255)

                                                                                                                            tttttCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTGATGGTTAGCa    <  1:120792/140‑1 (MQ=255)

                                                                                                                            tttttCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTGATGGTTAGCa    <  1:881830/140‑1 (MQ=255)

                                                                                                                              tttCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTGATGGTTAGCAct  <  2:659776/140‑1 (MQ=255)

                                                                                                                              tttCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTGATGGTTAGCAct  <  1:505901/140‑1 (MQ=255)

                                                                                                                              tttCATCATCCTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATACCCAGATAATTCTGATGGTTAGCAct  <  1:35032/140‑1 (MQ=255)

ATCAGTCTGTGGTTTGCCGTCAGAGACGATGGTACGTCCGTCATTGGTGTGCATCACATAGTTCGAACCGGAACAGGCGCTCAGGGCAAAAGTCAGCATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTGATGGTTAGCACT  >  NC_000913/2943014‑2943279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A