Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 116 72.9 2471836 99.3% 2454533 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,139,565 C→T T280M (ACG→ATG)  yghU → disulfide reductase/organic hydroperoxide reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,139,5650CT100.0% 227.7 / NA 64T280M (ACG→ATG) yghUdisulfide reductase/organic hydroperoxide reductase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (33/31);  total (33/31)

GTACAACGCTGGGCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGG  >  NC_000913/3139441‑3139698
                                                                                                                            |                                                                                                                                     
gTACAACGCTGGGCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTTGAGATGAATACGGAAGATaa                                                                                                                        >  1:948701/1‑140 (MQ=255)
gTACAACGCTGGGCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATaa                                                                                                                        >  1:349439/1‑140 (MQ=255)
     aCGCTGGGCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTc                                                                                                                   <  2:1085262/140‑1 (MQ=255)
     aCGCTGGGCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTc                                                                                                                   <  1:593827/140‑1 (MQ=255)
     aCGCTGGGCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTc                                                                                                                   <  1:550072/140‑1 (MQ=255)
      cGCTGGGCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCa                                                                                                                  <  2:486308/140‑1 (MQ=255)
         tGGGCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAggg                                                                                                               >  2:244620/1‑140 (MQ=255)
           ggCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTc                                                                                                                   <  1:1064867/134‑1 (MQ=255)
           ggCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTc                                                                                                                   >  2:1064867/1‑134 (MQ=255)
           ggCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGt                                                                                                             >  1:867124/1‑140 (MQ=255)
           ggCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGt                                                                                                             >  2:1035290/1‑140 (MQ=255)
           ggCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGt                                                                                                             >  2:111042/1‑140 (MQ=255)
           ggCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGt                                                                                                             >  1:453137/1‑140 (MQ=255)
           ggCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGt                                                                                                             <  1:346361/140‑1 (MQ=255)
           ggCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGt                                                                                                             <  2:453137/140‑1 (MQ=255)
                aagaagTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAg                                                                                                          <  1:767955/138‑1 (MQ=255)
                aagaagTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAg                                                                                                          >  2:767955/1‑138 (MQ=255)
                         gCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTtc                                                                                               >  2:123089/1‑140 (MQ=255)
                             aCGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTtcgtcg                                                                                           >  2:1233743/1‑140 (MQ=255)
                               gTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCgca                                                                                         <  2:349439/140‑1 (MQ=255)
                                    gcggTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAg                                                                                    <  2:351119/140‑1 (MQ=255)
                                    gcggTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAg                                                                                    <  2:1008447/140‑1 (MQ=255)
                                              gTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGc                                                                          >  1:276459/1‑140 (MQ=255)
                                                  gCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAgg                                                                           <  1:383309/135‑1 (MQ=255)
                                                  gCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAgg                                                                           >  2:383309/1‑135 (MQ=255)
                                                    gTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATa                                                                    <  1:1181068/140‑1 (MQ=255)
                                                           tAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGtt                                                             >  1:551414/1‑140 (MQ=255)
                                                           tAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCAGGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGtt                                                             <  2:444010/140‑1 (MQ=255)
                                                            aaCCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTc                                                            >  2:215219/1‑140 (MQ=255)
                                                                 cACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgcc                                                       >  1:196280/1‑140 (MQ=255)
                                                                 cACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgcc                                                       >  1:270807/1‑140 (MQ=255)
                                                                 cACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgcc                                                       >  2:686054/1‑140 (MQ=255)
                                                                  aCCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgccg                                                      >  2:700724/1‑140 (MQ=255)
                                                                  aCCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgccg                                                      >  2:405902/1‑140 (MQ=255)
                                                                  aCCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgccg                                                      <  1:215219/140‑1 (MQ=255)
                                                                    cAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCa                                                    >  2:657062/1‑140 (MQ=255)
                                                                         gACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                               <  1:686054/140‑1 (MQ=255)
                                                                         gACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                               <  2:196280/140‑1 (MQ=255)
                                                                            cGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaa                                            >  1:1227424/1‑140 (MQ=255)
                                                                            cGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaa                                            <  2:773575/140‑1 (MQ=255)
                                                                              cTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATc                                          >  1:530739/1‑140 (MQ=255)
                                                                              cTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATc                                          >  1:772105/1‑140 (MQ=255)
                                                                                 aaTGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTg                                       <  2:399858/140‑1 (MQ=255)
                                                                                 aaTGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGACCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTg                                       <  1:1233743/140‑1 (MQ=255)
                                                                                   tGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGca                                     <  1:657062/140‑1 (MQ=255)
                                                                                   tGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGca                                     <  2:772105/140‑1 (MQ=255)
                                                                                          ttGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGcc                              <  1:868184/140‑1 (MQ=255)
                                                                                           tGCATGAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCt                             >  2:190849/1‑140 (MQ=255)
                                                                                                gAGCGCCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGc                        >  1:957148/1‑140 (MQ=255)
                                                                                                   cgcCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGAc                     <  2:388254/140‑1 (MQ=255)
                                                                                                   cgcCATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGAc                     <  1:700724/140‑1 (MQ=255)
                                                                                                      cATGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCt                  >  2:45124/1‑140 (MQ=255)
                                                                                                        tGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGc                <  2:210279/140‑1 (MQ=255)
                                                                                                        tGACGCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGc                >  2:891182/1‑140 (MQ=255)
                                                                                                            gCCAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCcgcg            <  2:957148/140‑1 (MQ=255)
                                                                                                             ccAGTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGt           <  1:756523/140‑1 (MQ=255)
                                                                                                                gTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGc                >  1:833043/1‑132 (MQ=255)
                                                                                                                gTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGc                <  2:833043/132‑1 (MQ=255)
                                                                                                                gTGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCtt        >  1:950024/1‑140 (MQ=255)
                                                                                                                 tGATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTa       >  1:1187734/1‑140 (MQ=255)
                                                                                                                  gATTTCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTAt      <  2:867124/140‑1 (MQ=255)
                                                                                                                    tttCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCa    >  1:889309/1‑140 (MQ=255)
                                                                                                                    tttCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCa    >  1:447522/1‑140 (MQ=255)
                                                                                                                      tCGAGATGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAgg  <  1:244620/140‑1 (MQ=255)
                                                                                                                            |                                                                                                                                     
GTACAACGCTGGGCGAAAGAAGTAGGCGAACGTCCGGCGGTGAAACGTGGGCGTATTGTTAACCGCACCAACGGACCGCTGAATGAGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGG  >  NC_000913/3139441‑3139698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A