Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 116 72.9 2471836 99.3% 2454533 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,305,310 T→C S170G (AGC→GGC)  mtr ← tryptophan:H(+) symporter Mtr

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,305,3100TC100.0% 297.6 / NA 82S170G (AGC→GGC) mtrtryptophan:H(+) symporter Mtr
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (43/39);  total (43/39)

CATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAACCCGCCGCCCGTGCCGGGAC  >  NC_000913/3305173‑3305445
                                                                                                                                         |                                                                                                                                       
catcaGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCAc                                                                                                                                       <  2:807353/140‑1 (MQ=255)
   caGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCaa                                                                                                                                    >  1:654934/1‑140 (MQ=255)
     ggCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAg                                                                                                                                  >  2:715712/1‑140 (MQ=255)
     ggCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAg                                                                                                                                  <  1:67654/140‑1 (MQ=255)
      gCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAgg                                                                                                                                 >  2:353494/1‑140 (MQ=255)
       cTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGt                                                                                                                                <  1:353494/140‑1 (MQ=255)
        ttGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTg                                                                                                                               <  1:715712/140‑1 (MQ=255)
          ggCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAg                                                                                                                             >  1:1029720/1‑140 (MQ=255)
                  aCCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAgg                                                                                                                     >  1:515611/1‑140 (MQ=255)
                         tAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGgaag                                                                                                                         <  2:589795/129‑1 (MQ=255)
                         tAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGgaag                                                                                                                         >  1:589795/1‑129 (MQ=255)
                           aCCAAACGATGCCAGACAGAACGGCAGTGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACtt                                                                                                            >  2:249758/1‑140 (MQ=255)
                           aCCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGATGAAGAAGGTAATGACtt                                                                                                            >  2:1097633/1‑140 (MQ=255)
                           aCCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACtt                                                                                                            >  1:967950/1‑140 (MQ=255)
                             cAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGgaag                                                                                                                         <  1:310579/125‑1 (MQ=255)
                             cAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGgaag                                                                                                                         >  2:310579/1‑125 (MQ=255)
                               aaCGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGc                                                                                                        >  1:562746/1‑140 (MQ=255)
                                aCGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGcc                                                                                                       <  1:891551/140‑1 (MQ=255)
                                aCGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGcc                                                                                                       >  2:955136/1‑140 (MQ=255)
                                 cGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGccc                                                                                                      >  2:20954/1‑140 (MQ=255)
                                    tGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCa                                                                                                   >  1:467277/1‑140 (MQ=255)
                                    tGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCa                                                                                                   >  2:153780/1‑140 (MQ=255)
                                    tGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCa                                                                                                   <  1:927595/140‑1 (MQ=255)
                                          acagaACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACaa                                                                                             >  1:514660/1‑140 (MQ=255)
                                             gaACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCg                                                                                          <  1:20954/140‑1 (MQ=255)
                                             gaACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCg                                                                                          <  2:606177/140‑1 (MQ=255)
                                              aaCGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGc                                                                                         <  2:654934/140‑1 (MQ=255)
                                              aaCGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGc                                                                                         <  2:238634/140‑1 (MQ=255)
                                              aaCGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGc                                                                                         <  1:832002/140‑1 (MQ=255)
                                              aaCGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACCTTCGCCCCCAGCACAATCg                                                                                          <  2:1116607/139‑1 (MQ=255)
                                              aaCGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACCTTCGCCCCCAGCACAATCg                                                                                          >  1:1116607/1‑139 (MQ=255)
                                                cGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAAt                                                                                            <  1:567331/135‑1 (MQ=255)
                                                cGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAAt                                                                                            >  2:567331/1‑135 (MQ=255)
                                                cGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTg                                                                                       >  1:870788/1‑140 (MQ=255)
                                                           tcaACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTg                                                                            <  2:1029720/140‑1 (MQ=255)
                                                                  aTACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCtt                                                                     <  1:153780/140‑1 (MQ=255)
                                                                  aTACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCtt                                                                     <  2:514660/140‑1 (MQ=255)
                                                                  aTACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCtt                                                                     >  2:654232/1‑140 (MQ=255)
                                                                    aCGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTa                                                                   >  2:497854/1‑140 (MQ=255)
                                                                       gTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTg                                                                <  1:249758/140‑1 (MQ=255)
                                                                       gTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTg                                                                <  1:1137991/140‑1 (MQ=255)
                                                                         gCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCt                                                              >  2:394760/1‑140 (MQ=255)
                                                                         gCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCt                                                              >  1:174921/1‑140 (MQ=255)
                                                                         gCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCt                                                              >  2:687910/1‑140 (MQ=255)
                                                                         gCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCt                                                              >  1:42722/1‑140 (MQ=255)
                                                                         gCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATCCGACTGACGGCTTTAGTGCt                                                              <  1:677626/140‑1 (MQ=255)
                                                                          cATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACt                                                                             <  2:1063529/124‑1 (MQ=255)
                                                                          cATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACt                                                                             >  1:1063529/1‑124 (MQ=255)
                                                                          cATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTc                                                             >  1:852986/1‑140 (MQ=255)
                                                                           aTAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCa                                                            >  1:1134173/1‑140 (MQ=255)
                                                                           aTAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCa                                                            >  1:357315/1‑140 (MQ=255)
                                                                             aaGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAac                                                          <  1:955136/140‑1 (MQ=255)
                                                                                  gCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAaccacac                                                     >  1:932343/1‑140 (MQ=255)
                                                                                      tGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAAccacaccaca                                                 >  2:111105/1‑140 (MQ=255)
                                                                                      tGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAAccacaccaca                                                 <  1:687910/140‑1 (MQ=255)
                                                                                       gCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACaa                                                <  2:932343/140‑1 (MQ=255)
                                                                                        cTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACaaa                                               <  2:967950/140‑1 (MQ=255)
                                                                                        cTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACaaa                                               <  1:654232/140‑1 (MQ=255)
                                                                                        cTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACaaa                                               <  2:515611/140‑1 (MQ=255)
                                                                                        cTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACaaa                                               <  1:808652/140‑1 (MQ=255)
                                                                                                 aCGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAg                                      <  2:174921/140‑1 (MQ=255)
                                                                                                  cGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGc                                     <  1:858403/140‑1 (MQ=255)
                                                                                                      gAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATg                                 >  2:356294/1‑140 (MQ=255)
                                                                                                            tGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGcaaaac                           >  2:440910/1‑140 (MQ=255)
                                                                                                            tGTCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGcaaaac                           >  2:47184/1‑140 (MQ=255)
                                                                                                              tCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGcaaaacca                         >  1:1092857/1‑140 (MQ=255)
                                                                                                              tCGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGcaaaacca                         >  2:16499/1‑140 (MQ=255)
                                                                                                               cGCAGGCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGcaaaaccaa                        <  1:497854/140‑1 (MQ=255)
                                                                                                                    gCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAAccc                   >  1:1105255/1‑140 (MQ=255)
                                                                                                                    gCTGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAAccc                   >  1:335545/1‑140 (MQ=255)
                                                                                                                      tGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGcaaaaccaaa                       >  2:36868/1‑134 (MQ=255)
                                                                                                                      tGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGcaaaaccaaa                       <  1:36868/134‑1 (MQ=255)
                                                                                                                      tGCACATGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAACccgc                 >  1:358869/1‑140 (MQ=255)
                                                                                                                        cacaTGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAACccgccg               >  2:342993/1‑140 (MQ=255)
                                                                                                                         acaTGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTCCCAGCAATGCAAAACCAAAACCcgccgc              <  1:130105/140‑1 (MQ=255)
                                                                                                                            tGCCCCAGCAGGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAACCCGCCGCCCg           >  1:479442/1‑140 (MQ=255)
                                                                                                                                  agcagGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAACCCGCCGCCCGTGCCgg     <  1:990302/140‑1 (MQ=255)
                                                                                                                                  agcagGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAACCCGCCGCCCGTGCCgg     <  2:357315/140‑1 (MQ=255)
                                                                                                                                  agcacGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAACCCGCCGCCCGTGCCgg     <  2:1134173/140‑1 (MQ=255)
                                                                                                                                    cagGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAACCCGCCGCCCGTGCCGGGa   <  2:870788/140‑1 (MQ=255)
                                                                                                                                    cagGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAACCCGCCGCCCGTGCCGGGa   <  2:335545/140‑1 (MQ=255)
                                                                                                                                     agGCCACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAACCCGCCGCCCGTGCCGGGAc  >  2:607208/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CATCAGGCTTGGCACGTTACCGTGATAACCAAACGATGCCAGACAGAACGGCAGGGTCATCAACAGATACGGTGCATAAGACGCATTGCTTTCGGCGACGTTGAACAATGTCGCAGGCTGCACATGCCCCAGCAGGCTACCAAAGGTGAGGAAGAAGGTAATGACTTTCGCCCCCAGCACAATCGCTGTCATGCGACTGACGGCTTTAGTGCTCAACCACACCACAAACGCTACCAGCAATGCAAAACCAAAACCCGCCGCCCGTGCCGGGAC  >  NC_000913/3305173‑3305445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A