Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 116 72.9 2471836 99.3% 2454533 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,661,834 T→G L474R (CTG→CGG)  mdtF → multidrug efflux pump RND permease MdtF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,661,8340TG100.0% 232.3 / NA 64L474R (CTG→CGG) mdtFmultidrug efflux pump RND permease MdtF
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (30/34);  total (30/34)

GGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCACGCTTCAACACGCTG  >  NC_000913/3661697‑3661964
                                                                                                                                         |                                                                                                                                  
ggaagCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTGCTTTCCTCATGGTTTAGGCCGTTGGCCTTTATGAGCGGTGCACCCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGa                                                                                                                                  <  2:134103/140‑1 (MQ=255)
 gaagCGAGGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGAGGGCTTTTATGAGGGGTGCAACCGGGGAGATTTACCGCCAGTTCTCCATCACGCGGAt                                                                                                                                 <  2:1208886/140‑1 (MQ=255)
  aagCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGAtc                                                                                                                                >  1:144366/1‑140 (MQ=255)
   agCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGAtct                                                                                                                               >  2:331847/1‑140 (MQ=255)
    gCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGAtctc                                                                                                                              >  1:300833/1‑140 (MQ=255)
           aTAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCAtg                                                                                                                       <  2:77485/140‑1 (MQ=255)
                tCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATgctgct                                                                                                                  <  2:854303/140‑1 (MQ=255)
                tCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATgctgct                                                                                                                  <  1:941840/140‑1 (MQ=255)
                tCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATgctgct                                                                                                                  <  1:45693/140‑1 (MQ=255)
                      gggCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGt                                                                                                            <  2:567971/140‑1 (MQ=255)
                      gggCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGt                                                                                                            <  1:1185969/140‑1 (MQ=255)
                      gggCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGt                                                                                                            <  1:280174/140‑1 (MQ=255)
                         cAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTAtt                                                                                                         >  2:692711/1‑140 (MQ=255)
                          aGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTAttt                                                                                                        >  1:987240/1‑140 (MQ=255)
                                 aCGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCaa                                                                                                 <  1:571981/140‑1 (MQ=255)
                                 aCGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCaa                                                                                                 >  2:174574/1‑140 (MQ=255)
                                        cTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCt                                                                                          <  1:454753/140‑1 (MQ=255)
                                        cTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCt                                                                                          <  1:1201065/140‑1 (MQ=255)
                                        cTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCt                                                                                          <  2:631393/140‑1 (MQ=255)
                                        cTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCt                                                                                          <  1:837219/140‑1 (MQ=255)
                                          ggTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGa                                                                                        <  2:760443/140‑1 (MQ=255)
                                           gTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCTATGAGCCTGAc                                                                                       >  2:617335/1‑140 (MQ=255)
                                                tATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACccctg                                                                                  >  1:294398/1‑140 (MQ=255)
                                                tATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACccctg                                                                                  <  2:477558/140‑1 (MQ=255)
                                                   tGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCt                                                                                          >  1:1189273/1‑129 (MQ=255)
                                                   tGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCt                                                                                          <  2:1189273/129‑1 (MQ=255)
                                                     ccGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACccctgccct                                                                              >  1:1213296/1‑139 (MQ=255)
                                                     ccGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACccctgccct                                                                              <  2:1213296/139‑1 (MQ=255)
                                                      cGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCtgt                                                                            >  2:1110192/1‑140 (MQ=255)
                                                                     aGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGa                                                             <  2:1038772/140‑1 (MQ=255)
                                                                     aGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGAGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGa                                                             >  2:1120066/1‑140 (MQ=255)
                                                                        gtTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAg                                                          <  1:858747/140‑1 (MQ=255)
                                                                            aTGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCcgc                                                      >  2:7442/1‑140 (MQ=255)
                                                                             tGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCcgcg                                                     <  1:695988/140‑1 (MQ=255)
                                                                              gCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCgcgc                                                    <  1:597646/140‑1 (MQ=255)
                                                                                 gATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCgg                                                 >  1:142589/1‑140 (MQ=255)
                                                                                 gATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCgg                                                 >  1:1142765/1‑140 (MQ=255)
                                                                                   tGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGaa                                               >  1:952506/1‑140 (MQ=255)
                                                                                   tGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGaa                                               >  1:1079965/1‑140 (MQ=255)
                                                                                   tGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGaa                                               >  1:194011/1‑140 (MQ=255)
                                                                                      ccTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGc                                            >  1:201261/1‑140 (MQ=255)
                                                                                      ccTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGc                                            <  2:266672/140‑1 (MQ=255)
                                                                                              aGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACaa                                    <  1:855383/140‑1 (MQ=255)
                                                                                              aGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACaa                                    <  1:1017864/140‑1 (MQ=255)
                                                                                              aGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACaa                                    <  2:144366/140‑1 (MQ=255)
                                                                                              aGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACaa                                    <  2:294398/140‑1 (MQ=255)
                                                                                               gCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACaaa                                   >  1:280612/1‑140 (MQ=255)
                                                                                                  gTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCt                                >  1:1008904/1‑140 (MQ=255)
                                                                                                   tGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTa                               >  2:465566/1‑140 (MQ=255)
                                                                                                   tGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTa                               >  2:581182/1‑140 (MQ=255)
                                                                                                     cAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAAc                             >  1:801029/1‑140 (MQ=255)
                                                                                                        ccGGGGAGATCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGcc                          >  1:1140509/1‑140 (MQ=255)
                                                                                                               gaTCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCg                   <  2:987240/140‑1 (MQ=255)
                                                                                                                 tCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCa                 <  1:331847/140‑1 (MQ=255)
                                                                                                                 tCTACCGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCa                 <  1:174574/140‑1 (MQ=255)
                                                                                                                      cGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCACg               >  1:896234/1‑137 (MQ=255)
                                                                                                                      cGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCACg               <  2:896234/137‑1 (MQ=255)
                                                                                                                      cGCCAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCACGCtt            >  2:29506/1‑140 (MQ=255)
                                                                                                                        ccAGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCACGCTTCa          >  2:1060689/1‑140 (MQ=255)
                                                                                                                          aGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCACGCTTCAac        >  2:33071/1‑140 (MQ=255)
                                                                                                                          aGTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCACGCTTCAac        >  2:351478/1‑140 (MQ=255)
                                                                                                                           gTTCTCCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCACGCTTCAaca       <  1:1001344/140‑1 (MQ=255)
                                                                                                                             tctcCATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCACGCTTCAACACg     <  2:1079965/140‑1 (MQ=255)
                                                                                                                                ccATCACGCGGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCACGCTTCAACACGCTg  <  2:952506/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                  
GGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCATTCTGAAAGCCGCGCCGGAAGGCGGTCACAAACCTAACGCCCTGTTCGCACGCTTCAACACGCTG  >  NC_000913/3661697‑3661964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A