Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	116	72.9	2471836	99.3%	2454533	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,488,579	(C)_7→8	coding (1485/1503 nt)	yjgR ←	DUF853 domain‑containing protein YjgR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,488,572	1	.	C	96.4%	187.3 / ‑0.6	55	coding (1492/1503 nt)	yjgR	DUF853 domain‑containing protein YjgR
Reads supporting (aligned to +/- strand): ref base . (0/2); new base C (28/25); total (28/27)
Fisher's exact test for biased strand distribution p-value = 2.36e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCT‑‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTT  >  NC_000913/4488433‑4488707

cTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTtcttct                                                                                                                                            <  2:126703/140‑1 (MQ=255)

      tattGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCT‑‑cccccc                                                                                                                                    >  1:521571/1‑140 (MQ=255)

         tGTTAGCAAAGTGTGCTTCGTTCATTACTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCT‑‑cccccc‑cca                                                                                                                                >  1:590284/1‑138 (MQ=255)

            tAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCT‑‑cccccc‑ccagca                                                                                                                             <  2:1062744/140‑6 (MQ=255)

                        cTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACa                                                                                                                  >  2:1066264/1‑140 (MQ=255)

                           cGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAAc                                                                                                                   >  2:701094/1‑136 (MQ=255)

                           cGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAAc                                                                                                                   <  1:701094/136‑1 (MQ=255)

                           cGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATcc                                                                                                               >  2:1014379/1‑140 (MQ=255)

                             ttCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCaaa                                                                                                                            >  2:302121/1‑125 (MQ=255)

                             ttCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCaaa                                                                                                                            <  1:302121/125‑1 (MQ=255)

                              tCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTCCCCCCCC‑CAGCAAACTCCCCAACATCCcg                                                                                                             >  1:36922/1‑140 (MQ=255)

                               cATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCcgcg                                                                                                           <  1:1175186/140‑1 (MQ=255)

                                                            tatTGCAGTGGGGTGGGCAGGATAAGACGCGGCAGAGACGCACCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACAGCCCGCGTACAATCTGATTCGTCACTTGGCGAgcgg                                                                              <  2:590284/140‑1 (MQ=255)

                                                               tGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGgcgc                                                                           >  2:29796/1‑140 (MQ=255)

                                                               tGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGgcgc                                                                           >  1:958550/1‑140 (MQ=255)

                                                                gCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCt                                                                          <  1:480011/140‑1 (MQ=255)

                                                                gCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCt                                                                          <  1:1014379/140‑1 (MQ=255)

                                                                 cAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCCCTTGGCGAGCGGCGCtt                                                                         >  2:404611/1‑140 (MQ=255)

                                                                    tggggtgggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTg                                                                      >  1:1015283/1‑140 (MQ=255)

                                                                    tggggtgggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTg                                                                      >  1:1098445/1‑140 (MQ=255)

                                                                    tggggtgggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTg                                                                      >  1:453531/1‑140 (MQ=255)

                                                                    tggggtgggCATGATAAGACGAGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTg                                                                      >  2:875220/1‑140 (MQ=255)

                                                                     ggggtgggCAGGATAAGCGGGGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCGGACTTCCCTTCTT‑A‑‑CCCCCC‑CAGCAAACTCTCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGcc                                                                   <  2:959272/140‑1 (MQ=255)

                                                                      gggtgggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGc                                                                    >  1:332267/1‑140 (MQ=255)

                                                                      gggtgggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGc                                                                    >  1:847131/1‑140 (MQ=255)

                                                                       ggtgggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGcc                                                                   <  2:830254/140‑1 (MQ=255)

                                                                       ggtgggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGcc                                                                   <  1:404611/140‑1 (MQ=255)

                                                                       ggtgggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGcc                                                                   <  1:875220/140‑1 (MQ=255)

                                                                        gtgggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTCCCCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGcc                                                                   <  2:36922/140‑1 (MQ=255)

                                                                        gtgggCATGATAAGACGCGCCAGAGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCa                                                                  >  1:423758/1‑140 (MQ=255)

                                                                          gggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCAtt                                                                <  2:1015283/140‑1 (MQ=255)

                                                                           ggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTg                                                               >  1:988915/1‑140 (MQ=255)

                                                                           ggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTg                                                               >  2:503223/1‑140 (MQ=255)

                                                                           ggCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCT‑‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGt                                                              <  2:1002299/140‑1 (MQ=255)

                                                                            gCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGt                                                              >  1:1185242/1‑140 (MQ=255)

                                                                               tGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTg                                                           <  2:958550/140‑1 (MQ=255)

                                                                                gATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CCGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGc                                                          >  2:601970/1‑140 (MQ=255)

                                                                                gATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCa                                                                  >  2:492108/1‑132 (MQ=255)

                                                                                gATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCa                                                                  <  1:492108/132‑1 (MQ=255)

                                                                                  tAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGTGCTTTTGGCCATTGTTTGcac                                                        <  2:137256/140‑1 (MQ=255)

                                                                                    aGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGcacca                                                      <  2:847131/140‑1 (MQ=255)

                                                                                       cgcgCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGcaccacac                                                   <  1:549595/140‑1 (MQ=255)

                                                                                          gcCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTg                                                           >  2:338122/1‑129 (MQ=255)

                                                                                          gcCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTg                                                           <  1:338122/129‑1 (MQ=255)

                                                                                          gcCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCAt                                                >  2:388411/1‑140 (MQ=255)

                                                                                          gcCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCAt                                                >  2:805933/1‑140 (MQ=255)

                                                                                           ccAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCAtc                                               >  2:177554/1‑140 (MQ=255)

                                                                                           ccAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTAACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGcacca                                                      <  2:484808/133‑1 (MQ=255)

                                                                                           ccAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTAACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGcacca                                                      >  1:484808/1‑133 (MQ=255)

                                                                                                         ggCAAAGACAAATCTCGCCTGACTTACCTTCTTCT‑‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCcgcg                                <  2:681406/140‑1 (MQ=255)

                                                                                                          gCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCcgcg                                <  2:332267/140‑1 (MQ=255)

                                                                                                          gCAAAGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCcgcg                                <  2:1185242/140‑1 (MQ=255)

                                                                                                             aaGACAAATCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTgg                             <  1:1066264/140‑1 (MQ=255)

                                                                                                                  aaaTCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCgg                        <  2:521571/140‑1 (MQ=255)

                                                                                                                    aTCTCGCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTa                      >  2:805791/1‑140 (MQ=255)

                                                                                                                         gCCTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGcc                 <  2:988915/140‑1 (MQ=255)

                                                                                                                          ccTGACTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCg                >  1:1208093/1‑140 (MQ=255)

                                                                                                                              aCTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACa            <  2:1208093/140‑1 (MQ=255)

                                                                                                                              aCTTACCTTCTTCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACa            <  1:708479/140‑1 (MQ=255)

                                                                                                                                    cttcttCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAata       <  2:606435/139‑1 (MQ=255)

                                                                                                                                    cttcttCTC‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAata       >  1:606435/1‑139 (MQ=255)

                                                                                                                                       cttctc‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCt   >  1:847747/1‑140 (MQ=255)

                                                                                                                                       cttctc‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCt   >  1:803982/1‑140 (MQ=255)

                                                                                                                                        ttct‑‑CCCCCCTCAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCtt  >  2:775575/1‑140 (MQ=255)

CTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCT‑‑CCCCCC‑CAGCAAACTCCCCAACATCCCGCGTACAATCTGATTCGTCACTTGGCGAGCGGCGCTTTTGGCCATTGTTTGCACCACACCATCTTTCTTCCCGCCGCGTGGTCCGGTAGTGCCGAACAAAATATCCTT  >  NC_000913/4488433‑4488707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A