Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F28 I1 R1	121	68.4	2351762	99.3%	2335299	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,988,156	G→A	S207S (TCG→TCA)	yqeH →	putative LuxR family transcriptional regulator YqeH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,988,156	0	G	A	100.0%	429.0 / NA	119	S207S (TCG→TCA)	yqeH	putative LuxR family transcriptional regulator YqeH
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (57/62); total (57/62)

Only 100 of 119 total aligned reads displayed.

TATATGGTTTCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCGGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGTATTTAAAACCATCACACGAAA  >  NC_000913/2988019‑2988290

tataTGGTTTCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGt                                                                                                                                      >  2:254604/1‑140 (MQ=255)

tataTGGTTTCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGt                                                                                                                                      <  2:460673/140‑1 (MQ=255)

  tatGGTTTCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTcc                                                                                                                                    >  2:173398/1‑140 (MQ=255)

    tGGTTTCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTcc                                                                                                                                    <  2:175160/138‑1 (MQ=255)

    tGGTTTCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTcc                                                                                                                                    >  1:175160/1‑138 (MQ=255)

    tGGTTTCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCaa                                                                                                                                  <  1:254604/140‑1 (MQ=255)

     ggTTTCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAAc                                                                                                                                 >  1:175364/1‑140 (MQ=255)

      gTTTCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACa                                                                                                                                <  1:983815/140‑1 (MQ=255)

      gTTTCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACa                                                                                                                                <  2:585893/140‑1 (MQ=255)

       tttCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACAt                                                                                                                               >  1:1035029/1‑140 (MQ=255)

       tttCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACAt                                                                                                                               >  2:171664/1‑140 (MQ=255)

         tCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTg                                                                                                                             >  2:440761/1‑140 (MQ=255)

         tCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTg                                                                                                                             >  1:346838/1‑140 (MQ=255)

           tGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGAt                                                                                                                           <  2:1127284/140‑1 (MQ=255)

                ataATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCa                                                                                                                      >  1:683807/1‑140 (MQ=255)

                     ccATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGAc                                                                                                                 <  1:288778/140‑1 (MQ=255)

                     ccATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGAc                                                                                                                 >  1:84303/1‑140 (MQ=255)

                       atatCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGAcca                                                                                                               >  1:428677/1‑140 (MQ=255)

                       atatCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGAc                                                                                                                 >  1:359322/1‑138 (MQ=255)

                       atatCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGAc                                                                                                                 <  2:359322/138‑1 (MQ=255)

                         atCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGAccagc                                                                                                             <  1:394943/140‑1 (MQ=255)

                         atCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGAccagc                                                                                                             >  2:11137/1‑140 (MQ=255)

                         atCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGAccagc                                                                                                             >  2:622561/1‑140 (MQ=255)

                         atCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGAccagc                                                                                                             <  2:625181/140‑1 (MQ=255)

                              aTTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGaa                                                                                                        >  1:592917/1‑140 (MQ=255)

                              aTTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGaa                                                                                                        >  1:733885/1‑140 (MQ=255)

                                tGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTc                                                                                                                       <  1:493200/123‑1 (MQ=255)

                                 gCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGAccagcca                                                                                                           >  2:313966/1‑134 (MQ=255)

                                 gCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGAccagcca                                                                                                           <  1:313966/134‑1 (MQ=255)

                                  cTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGATAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCAt                                                                                                    >  2:394825/1‑140 (MQ=255)

                                   tGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATa                                                                                                   <  2:14308/140‑1 (MQ=255)

                                    gAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATAc                                                                                                  <  1:957900/140‑1 (MQ=255)

                                     aaGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATAct                                                                                                 <  2:982803/140‑1 (MQ=255)

                                     aaGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATAct                                                                                                 <  2:592917/140‑1 (MQ=255)

                                     aaGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATAct                                                                                                 <  1:979562/140‑1 (MQ=255)

                                     aaGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATAct                                                                                                 <  1:622411/140‑1 (MQ=255)

                                     aaGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATAct                                                                                                 <  1:11137/140‑1 (MQ=255)

                                      aGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATActc                                                                                                <  2:941169/140‑1 (MQ=255)

                                       gTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATActct                                                                                               <  2:235295/140‑1 (MQ=255)

                                       gTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATActct                                                                                               <  2:1035029/140‑1 (MQ=255)

                                          cTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATAc                                                                                                  <  2:48757/134‑1 (MQ=255)

                                          cTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATAc                                                                                                  >  1:48757/1‑134 (MQ=255)

                                             gatatggatatCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATAc                                                                                                  >  2:809671/1‑131 (MQ=255)

                                              atatggatatCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTtata                                                                                        <  2:688403/140‑1 (MQ=255)

                                               tatggatatCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATAc                                                                                       >  2:324594/1‑140 (MQ=255)

                                                atggatatCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTGAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACg                                                                                      <  2:217623/140‑1 (MQ=255)

                                                 tggatatCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACgg                                                                                     >  1:1041302/1‑140 (MQ=255)

                                                    atatCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATa                                                                                                   >  1:662914/1‑123 (MQ=255)

                                                    atatCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATa                                                                                                   <  2:662914/123‑1 (MQ=255)

                                                      atCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCAtt                                                                                >  1:863593/1‑140 (MQ=255)

                                                       tCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGc                                                                                   >  2:652313/1‑136 (MQ=255)

                                                       tCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGc                                                                                   <  1:652313/136‑1 (MQ=255)

                                                       tCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCAttt                                                                               >  1:873658/1‑140 (MQ=255)

                                                       tCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCAttt                                                                               >  1:751440/1‑140 (MQ=255)

                                                         cGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTAt                                                                             <  1:193522/140‑1 (MQ=255)

                                                         cGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTAt                                                                             >  1:69079/1‑140 (MQ=255)

                                                            aGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGa                                                                          <  2:69079/140‑1 (MQ=255)

                                                             gCATCTACGCGTACAAGCAACGAATCGAAAAGATAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTAttcaa                                                                         <  1:394825/140‑4 (MQ=255)

                                                             gCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGaa                                                                         >  1:570511/1‑140 (MQ=255)

                                                             gCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGaa                                                                         <  2:459805/140‑1 (MQ=255)

                                                                tCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATg                                                                      >  1:1028861/1‑140 (MQ=255)

                                                                  tACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTc                                                                    >  1:787679/1‑140 (MQ=255)

                                                                  tACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTc                                                                    >  2:913150/1‑140 (MQ=255)

                                                                  tACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTc                                                                    >  2:402764/1‑140 (MQ=255)

                                                                    cgcgTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCg                                                                  >  1:962541/1‑140 (MQ=255)

                                                                    cgcgTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCg                                                                  <  1:947589/140‑1 (MQ=255)

                                                                     gcgTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGt                                                                 <  1:324594/140‑1 (MQ=255)

                                                                     gcgTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGt                                                                 <  2:733178/140‑1 (MQ=255)

                                                                     gcgTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGt                                                                 <  1:733064/140‑1 (MQ=255)

                                                                     gcgTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGt                                                                 <  1:402764/140‑1 (MQ=255)

                                                                      cgTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTa                                                                <  2:1041302/140‑1 (MQ=255)

                                                                       gTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTAt                                                               >  1:679599/1‑140 (MQ=255)

                                                                         aCAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTAttt                                                             <  2:350303/140‑1 (MQ=255)

                                                                           aaGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTta                                                           >  2:420752/1‑140 (MQ=255)

                                                                             gCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTtata                                                         >  1:457195/1‑140 (MQ=255)

                                                                              cAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATaa                                                        >  1:223950/1‑140 (MQ=255)

                                                                                     tCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGcc                                                 <  2:873658/140‑1 (MQ=255)

                                                                                       gAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGt                                               <  1:727565/140‑1 (MQ=255)

                                                                                          aaGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTccc                                            <  2:787679/140‑1 (MQ=255)

                                                                                                aTGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAag                                      >  2:455651/1‑140 (MQ=255)

                                                                                                 tGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAaga                                     <  2:165691/140‑1 (MQ=255)

                                                                                                   ggtggtAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGt                                   <  1:440761/140‑1 (MQ=255)

                                                                                                   ggtggtAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGt                                   <  2:570511/140‑1 (MQ=255)

                                                                                                   ggtggtAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGt                                   <  1:171664/140‑1 (MQ=255)

                                                                                                   ggtggtAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGt                                   <  2:733885/140‑1 (MQ=255)

                                                                                                   ggtggtAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGt                                   <  2:679599/140‑1 (MQ=255)

                                                                                                      ggtAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTaaa                                <  1:31515/140‑1 (MQ=255)

                                                                                                      ggtAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTaaa                                <  1:186471/140‑1 (MQ=255)

                                                                                                        tAAAATAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAaca                              <  1:886526/140‑1 (MQ=255)

                                                                                                         aaaaTAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAacac                             <  2:863593/140‑1 (MQ=255)

                                                                                                           aaTAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCa                           <  1:455651/140‑1 (MQ=255)

                                                                                                             tAAACGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATa                         <  1:768625/140‑1 (MQ=255)

                                                                                                              aaaCGAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGACCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAg                        <  2:683807/140‑1 (MQ=255)

                                                                                                                  gAATTATTTATTCGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGTAtt                    >  1:8245/1‑140 (MQ=255)

                                                                                                                              cGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGTATTTAAAACCATcac        <  2:1028861/140‑1 (MQ=255)

                                                                                                                              cGTTCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGTATTTAAAACCATcac        >  1:742201/1‑140 (MQ=255)

                                                                                                                                ttCACATTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGTATTTAAAACCATCacac      >  1:150341/1‑140 (MQ=255)

                                                                                                                                  cacaTTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGTATTTAAAACCATCACACGa    >  2:1165186/1‑140 (MQ=255)

                                                                                                                                  cacaTTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGTATTTAAAACCATCACACGa    >  2:80209/1‑140 (MQ=255)

                                                                                                                                  cacaTTCAGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGTATTTAAAACCATCACACGa    >  1:797610/1‑140 (MQ=255)

TATATGGTTTCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTACGCGTACAAGCAACGAATCGAAAAGAGAATGGGTGGTAAAATAAACGAATTATTTATTCGTTCACATTCGGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGTATTTAAAACCATCACACGAAA  >  NC_000913/2988019‑2988290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A