Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F28 I1 R1
|
120 |
93.5 |
3664254 |
88.3% |
3235536 |
136.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,490,692 |
+C |
coding (1259/1695 nt) |
oxc ← |
oxalyl‑CoA decarboxylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,490,688 | 1 | . | C | 96.0%
| 364.7
/ 4.6
| 101 | coding (1263/1695 nt) | oxc | oxalyl‑CoA decarboxylase |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base C (41/56); total (42/59) |
| Fisher's exact test for biased strand distribution p-value = 6.39e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 117 total aligned reads displayed.
CCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACA‑CCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTCGCGCACAGCA > NC_000913/2490552‑2490820
|
ccGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGTGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGaca‑c < 2:367075/138‑1 (MQ=255)
ccGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGaca‑c < 1:48902/138‑1 (MQ=255)
ccGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGaca‑c < 1:1680246/138‑1 (MQ=255)
ccGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGaca‑c < 2:1760395/138‑1 (MQ=255)
ccGGCAGGTTATATCGACAAATCGTTGCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGaca‑c < 1:1280809/138‑1 (MQ=255)
cggTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCCCTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACG‑ccccca < 2:595115/137‑3 (MQ=255)
aGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACA‑ccccca < 2:1236443/138‑3 (MQ=255)
ggTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACA‑cccccag > 2:1302995/1‑135 (MQ=255)
ttATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACA‑cccccaggt < 2:1022318/138‑6 (MQ=255)
tataTCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTa < 2:601560/138‑1 (MQ=255)
atatCGACAAATCGTTTCAATTTCCATCCGACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTAc > 2:1279381/1‑138 (MQ=255)
cGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACcaca < 1:1745236/138‑1 (MQ=255)
gACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACA‑ccc > 2:1287731/1‑125 (MQ=255)
gACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACA‑ccc < 1:1287731/125‑1 (MQ=255)
aCAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGaca‑c > 2:295397/1‑122 (MQ=255)
aCAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGaca‑c < 1:295397/122‑1 (MQ=255)
aaaTCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATcc > 2:1220232/1‑138 (MQ=255)
aaaTCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATcc > 2:1414386/1‑138 (MQ=255)
aaTCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGaca‑c < 2:185808/119‑1 (MQ=255)
aaTCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGaca‑c > 1:185808/1‑119 (MQ=255)
aaTCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCa > 2:1715428/1‑138 (MQ=255)
aaTCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCa > 1:714099/1‑138 (MQ=255)
tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacg < 2:162835/138‑1 (MQ=255)
tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacg < 2:1133732/138‑1 (MQ=255)
tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacg < 1:37235/138‑1 (MQ=255)
tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacg < 1:438429/138‑1 (MQ=255)
tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacg < 2:1417697/138‑1 (MQ=255)
tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacg < 1:1468768/138‑1 (MQ=255)
tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacg < 1:1414386/138‑1 (MQ=255)
tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacg < 1:1413961/138‑1 (MQ=255)
tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacg < 2:301990/138‑1 (MQ=255)
tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacg < 2:538034/138‑1 (MQ=255)
tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacg < 1:1159567/138‑1 (MQ=255)
tCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacg < 1:1152662/138‑1 (MQ=255)
cAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCGTAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacga < 2:1115286/138‑1 (MQ=255)
cAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAgacgacga < 1:175220/138‑1 (MQ=255)
ttCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTg < 1:493467/138‑1 (MQ=255)
ttCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTg < 2:666635/138‑1 (MQ=255)
cACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATAc < 1:908607/138‑1 (MQ=255)
gAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACatat > 1:1516391/1‑138 (MQ=255)
aaaCCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATc > 2:957403/1‑138 (MQ=255)
aaaCCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATc > 2:305599/1‑138 (MQ=255)
aCCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCaa < 1:376212/138‑1 (MQ=255)
aCCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACA‑CCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCaat > 1:1545272/1‑138 (MQ=255)
aTCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTg < 2:65304/138‑1 (MQ=255)
aTCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTg < 2:1516391/138‑1 (MQ=255)
aTCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTg < 1:79422/138‑1 (MQ=255)
tCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGc > 2:1524594/1‑138 (MQ=255)
aCCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCAt > 1:61580/1‑138 (MQ=255)
cAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATcc < 2:1326913/138‑1 (MQ=255)
tGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTg > 1:1320639/1‑127 (MQ=255)
tGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTg < 2:1320639/127‑1 (MQ=255)
tGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAgg > 2:1030179/1‑138 (MQ=255)
gCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATAtt < 1:271680/120‑1 (MQ=255)
gCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATcc < 2:360549/133‑1 (MQ=255)
gCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGt > 1:7481/1‑138 (MQ=255)
gACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTAt < 2:1560023/138‑1 (MQ=255)
gACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTAt < 1:1030179/138‑1 (MQ=255)
cAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTAttt > 1:1504236/1‑138 (MQ=255)
cAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACA‑CCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTg < 2:75080/138‑1 (MQ=255)
aaCCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATcc > 2:1304744/1‑128 (MQ=255)
aaCCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATcc < 1:1304744/128‑1 (MQ=255)
aaCCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTg < 1:1196464/138‑1 (MQ=255)
aaCCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTg < 2:381273/138‑1 (MQ=255)
aCCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCAt < 2:831041/138‑1 (MQ=255)
aCCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACA‑CCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCAtt < 1:427174/138‑1 (MQ=255)
aGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTaa > 1:1811949/1‑138 (MQ=255)
gAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAAc < 2:85189/138‑1 (MQ=255)
gAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAAc < 2:1504236/138‑1 (MQ=255)
gAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAAc < 1:1603169/138‑1 (MQ=255)
gTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACtaa > 1:920473/1‑138 (MQ=255)
cTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTaaataaat > 1:912855/1‑138 (MQ=255)
cGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAAc < 2:1608023/122‑1 (MQ=255)
cGATGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAAc > 1:1608023/1‑122 (MQ=255)
aTGGCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGtt < 1:1569659/138‑1 (MQ=255)
ggCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTtct > 1:549947/1‑138 (MQ=255)
ggCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTtct > 2:660583/1‑138 (MQ=255)
ggCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTtct > 2:20580/1‑138 (MQ=255)
ggCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTtct > 1:1677732/1‑138 (MQ=255)
ggCATAGCCCATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTtct > 1:657131/1‑138 (MQ=255)
cATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATa > 1:1239677/1‑138 (MQ=255)
cATACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATa < 2:486779/138‑1 (MQ=255)
tACCGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACg < 2:712420/138‑1 (MQ=255)
cGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTcg < 2:637754/138‑1 (MQ=255)
cGATGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTcg < 1:1715428/138‑1 (MQ=255)
aTGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTcgcg < 2:497869/138‑1 (MQ=255)
aTGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTcgcg < 2:1606899/138‑1 (MQ=255)
aTGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTcgcg < 2:657131/138‑1 (MQ=255)
aTGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTcgcg < 1:20580/138‑1 (MQ=255)
tGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTcg < 2:799401/123‑1 (MQ=255)
tGCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTcg > 1:799401/1‑123 (MQ=255)
gCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTCGCGca > 2:1579457/1‑138 (MQ=255)
gCCCATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTCGCGca < 2:1811949/138‑1 (MQ=255)
cccATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTCGCGcac > 1:738936/1‑138 (MQ=255)
cccATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTCGCGcac > 1:605590/1‑138 (MQ=255)
cccATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTCGCGcac > 1:271986/1‑138 (MQ=255)
cccATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTCGCGcac > 2:1575015/1‑138 (MQ=255)
cccATGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCACGCAATACGTCGCGcac > 2:560339/1‑138 (MQ=255)
tGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTCGCGCACAGCa > 1:1187721/1‑138 (MQ=255)
tGACACCCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTCGCGCACAGCa > 2:253537/1‑138 (MQ=255)
|
CCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACA‑CCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCACCTTCATTAACTAAATAAATATCCTGGTTCTCGCGCAATACGTCGCGCACAGCA > NC_000913/2490552‑2490820
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
