Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 120 93.5 3664254 88.3% 3235536 136.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,565,631 G→A G418G (GGC→GGT)  eutA ← reactivating factor for ethanolamine ammonia‑lyase EutBC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,565,6310GA95.0% 249.5 / 2.3 80G418G (GGC→GGT) eutAreactivating factor for ethanolamine ammonia‑lyase EutBC
Reads supporting (aligned to +/- strand):  ref base G (2/2);  new base A (40/36);  total (42/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01

AGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGCGAGGCGGGAA  >  NC_000913/2565497‑2565764
                                                                                                                                      |                                                                                                                                     
aGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATAccc                                                                                                                                    >  2:1075042/1‑138 (MQ=255)
   gATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCaga                                                                                                                                 <  1:997572/138‑1 (MQ=255)
     tttCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGc                                                                                                                               <  1:811911/138‑1 (MQ=255)
          ccgtcaccgGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTAc                                                                                                                          <  1:97951/138‑1 (MQ=255)
               accgGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATAcc                                                                                                                                     <  1:1378870/122‑1 (MQ=255)
               accgGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATAcc                                                                                                                                     >  2:1378870/1‑122 (MQ=255)
                ccgGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGt                                                                                                                    >  2:1544112/1‑138 (MQ=255)
                 cgGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGc                                                                                                                               <  1:539922/126‑1 (MQ=255)
                 cgGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGc                                                                                                                               >  2:539922/1‑126 (MQ=255)
                       aaCCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGccc                                                                                                             <  1:1075042/138‑1 (MQ=255)
                       aaCCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGccc                                                                                                             <  1:857919/138‑1 (MQ=255)
                        aCCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCg                                                                                                            <  2:958539/138‑1 (MQ=255)
                            ttCCGCCAAAAAGACGCGTACCAATGTAGATATAGTGTCACGCGCGGACAATCACTTAGTCAATGTCTGCCAAAGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGGCCAGAGCTTTACCAAAGTACTGCCCGGcca                                                                                                        <  2:1135986/137‑1 (MQ=255)
                            aTCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGcca                                                                                                        <  2:199268/138‑1 (MQ=255)
                            aTCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGcca                                                                                                        <  1:1724092/138‑1 (MQ=255)
                             tCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGccac                                                                                                       <  2:1285535/138‑1 (MQ=255)
                             tCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGccac                                                                                                       <  2:177311/138‑1 (MQ=255)
                             tCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGccac                                                                                                       >  1:177311/1‑138 (MQ=255)
                              ccGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAATATACCCAGAGCTTTACCAAAGTCCTGCCCgg                                                                                                           >  1:715920/1‑133 (MQ=255)
                              ccGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAATATACCCAGAGCTTTACCAAAGTCCTGCCCgg                                                                                                           <  2:715920/133‑1 (MQ=255)
                              ccGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGccacc                                                                                                      <  2:613112/138‑1 (MQ=255)
                              ccGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGccacc                                                                                                      >  1:327398/1‑138 (MQ=255)
                                gCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGccacca                                                                                                     >  2:1089149/1‑137 (MQ=255)
                                gCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGccacca                                                                                                     <  1:1089149/137‑1 (MQ=255)
                                   aaaaaGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACcag                                                                                                 <  2:1559898/138‑1 (MQ=255)
                                            cGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATg                                                                                        <  2:628474/138‑1 (MQ=255)
                                            cGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATg                                                                                        <  1:378978/138‑1 (MQ=255)
                                              tACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGa                                                                                          >  2:1547611/1‑134 (MQ=255)
                                              tACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGa                                                                                          <  1:1547611/134‑1 (MQ=255)
                                              tACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCg                                                                                      <  2:1634685/138‑1 (MQ=255)
                                                 cAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGAt                                                                                   >  1:245449/1‑138 (MQ=255)
                                                 cAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGAt                                                                                   >  1:225202/1‑138 (MQ=255)
                                                  aaTGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGAtt                                                                                  >  2:1277128/1‑138 (MQ=255)
                                                                cccccGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGcga                                                                    >  1:1313099/1‑138 (MQ=255)
                                                                 ccccGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGcgac                                                                   >  2:1677384/1‑138 (MQ=255)
                                                                 ccccGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGcgac                                                                   >  1:425617/1‑138 (MQ=255)
                                                                 ccccGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGcgac                                                                   >  2:1244718/1‑138 (MQ=255)
                                                                 ccccGCGCGGACAATCACTTCCTCACTGACTGCCAACGGGAATTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGcgac                                                                   >  2:512833/1‑138 (MQ=255)
                                                                  cccGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGcgacg                                                                  >  2:957283/1‑138 (MQ=255)
                                                                  cccGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGcgacg                                                                  >  2:1201396/1‑138 (MQ=255)
                                                                  cccGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGcgacg                                                                  >  2:1282762/1‑138 (MQ=255)
                                                                     gcgcgGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGaaa                                                               >  1:360747/1‑138 (MQ=255)
                                                                      cgcgGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAAt                                                              >  2:1742529/1‑138 (MQ=255)
                                                                        cgGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCg                                                            >  1:1531050/1‑138 (MQ=255)
                                                                           aCAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGAcc                                                         >  2:1759100/1‑138 (MQ=255)
                                                                           aCAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGAcc                                                         >  2:392681/1‑138 (MQ=255)
                                                                            cAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCa                                                        <  1:1677384/138‑1 (MQ=255)
                                                                                  cTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGAc                                                          <  1:1270262/130‑1 (MQ=255)
                                                                                  cTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGAc                                                          >  2:1270262/1‑130 (MQ=255)
                                                                                   ttCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGtt                                                 <  1:1280057/138‑1 (MQ=255)
                                                                                   ttCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGtt                                                 <  1:957283/138‑1 (MQ=255)
                                                                                     cGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCCACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTtga                                               <  2:408609/138‑1 (MQ=255)
                                                                                       tCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTtgatg                                             >  1:827898/1‑138 (MQ=255)
                                                                                       tCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACACAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTtgatg                                             >  1:1677463/1‑138 (MQ=255)
                                                                                        cAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTtgatga                                            <  1:1759100/138‑1 (MQ=255)
                                                                                           tGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTATACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGAc                                                          >  2:812603/1‑121 (MQ=255)
                                                                                           tGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTATACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGAc                                                          <  1:812603/121‑1 (MQ=255)
                                                                                             aCTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTc                                       >  2:839266/1‑138 (MQ=255)
                                                                                               tGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGAcc                                                         >  1:1161781/1‑118 (MQ=255)
                                                                                               tGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGAcc                                                         <  2:1161781/118‑1 (MQ=255)
                                                                                                 ccAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTtga                                               <  1:1644238/126‑1 (MQ=255)
                                                                                                 ccAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTtga                                               >  2:1644238/1‑126 (MQ=255)
                                                                                                  cAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTAc                                  <  1:1544112/138‑1 (MQ=255)
                                                                                                   aaCGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTtga                                               <  1:152525/124‑1 (MQ=255)
                                                                                                   aaCGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTtga                                               >  2:152525/1‑124 (MQ=255)
                                                                                                    aCGGGAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACcg                                <  1:1277128/138‑1 (MQ=255)
                                                                                                        gAGTTGTTGTAGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCgcggc                            <  1:194152/138‑1 (MQ=255)
                                                                                                        gAGTTGTTGTAGCTGTGGGCGCAACAACATACACAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCgcggc                            <  2:1677463/138‑1 (MQ=255)
                                                                                                                  aGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTa                                   <  2:1506289/121‑1 (MQ=255)
                                                                                                                  aGCTGTGGGCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTa                                   >  1:1506289/1‑121 (MQ=255)
                                                                                                                        gggCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGc            >  2:959138/1‑138 (MQ=255)
                                                                                                                        gggCGCAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGc            >  1:1464890/1‑138 (MQ=255)
                                                                                                                          gcgcAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGCGa          <  2:1531050/138‑1 (MQ=255)
                                                                                                                          gcgcAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGCGa          >  2:1293981/1‑138 (MQ=255)
                                                                                                                          gcgcAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGCGa          >  1:1620944/1‑138 (MQ=255)
                                                                                                                           cgcAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGCGAg         >  2:372407/1‑138 (MQ=255)
                                                                                                                           cgcAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGCGAg         >  1:133589/1‑138 (MQ=255)
                                                                                                                           cgcAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGCGAg         >  2:1284908/1‑138 (MQ=255)
                                                                                                                           cgcAACAACATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGCGAg         >  1:725875/1‑138 (MQ=255)
                                                                                                                              aacaacATACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGCGAGGCg      <  1:1293981/138‑1 (MQ=255)
                                                                                                                                  acaTACCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGCGAGGCGGGaa  <  1:839266/138‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                     
AGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGGCGTAACGCACAGGCAGCGAGGCGGGAA  >  NC_000913/2565497‑2565764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A