Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F28 I1 R1
|
120 |
93.5 |
3664254 |
88.3% |
3235536 |
136.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,589,447 |
(G)5→6 |
coding (1853/3114 nt) |
acrD → |
multidrug efflux pump RND permease AcrD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,589,442 | 1 | . | G | 100.0%
| 294.8
/ NA
| 79 | P616P (CCT→CCG) | acrD | multidrug efflux pump RND permease AcrD |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (45/34); total (45/34) |
TTACTACCTCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCT‑GG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGC > NC_000913/2589306‑2589573
|
ttACTACCTCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCT‑g > 1:1686452/1‑138 (MQ=255)
ccTCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCT‑gg‑ggggt < 2:1582911/138‑3 (MQ=255)
tCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCT‑gg‑ggggtaa > 2:821624/1‑134 (MQ=255)
cGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCT‑gg‑ggg > 1:110656/1‑133 (MQ=255)
cGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCT‑gg‑ggg < 2:110656/133‑1 (MQ=255)
ggTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACg > 1:655289/1‑138 (MQ=255)
gTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAGGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACgg > 2:1059591/1‑138 (MQ=255)
gTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACgg > 1:439683/1‑138 (MQ=255)
gTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACgg > 1:780499/1‑138 (MQ=255)
gTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACgg > 1:220195/1‑138 (MQ=255)
gTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACgg > 1:1461839/1‑138 (MQ=255)
gTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACgg > 2:530623/1‑138 (MQ=255)
gTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCT‑GGTGGGTAACgg > 2:1080933/1‑138 (MQ=255)
aCAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGc > 1:354335/1‑138 (MQ=255)
aCAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGc > 2:782463/1‑138 (MQ=255)
tGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTGACGGGCAAAAc < 1:770903/138‑1 (MQ=255)
tGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAAc > 2:195472/1‑138 (MQ=255)
gCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACg > 1:1629871/1‑138 (MQ=255)
gCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACg > 2:666332/1‑138 (MQ=255)
ccAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTg > 2:404668/1‑138 (MQ=255)
aGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGgc < 2:337212/138‑1 (MQ=255)
aGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGgc < 1:782463/138‑1 (MQ=255)
aGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGgc < 2:890047/138‑1 (MQ=255)
aGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGgc < 1:1668208/138‑1 (MQ=255)
gCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGgcg > 1:195967/1‑138 (MQ=255)
gCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCAACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGgcg > 2:1317256/1‑138 (MQ=255)
gCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGATTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGgcg > 2:1138628/1‑138 (MQ=255)
gCGGTTCAACGC‑ACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGgcgc > 1:930338/1‑138 (MQ=255)
gTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGa > 2:550834/1‑138 (MQ=255)
aaCGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGt < 1:404668/138‑1 (MQ=255)
aCGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTTTGGCCCTGGG‑GGGGAACGGGCAAAACGTGGCGCGGATGtt > 2:1620755/1‑138 (MQ=255)
cGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGttt < 1:821624/138‑1 (MQ=255)
acgcacaacaGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGttt < 2:930338/134‑1 (MQ=255)
acaGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGcc > 1:951667/1‑138 (MQ=255)
acaGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGcc > 1:1741380/1‑138 (MQ=255)
aGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTg < 2:1542449/138‑1 (MQ=255)
ccTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCTCCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAg > 1:139978/1‑138 (MQ=255)
aaGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTgg > 2:1455661/1‑138 (MQ=255)
gTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCAACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAg < 1:1317256/138‑1 (MQ=255)
cGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCg < 2:1461839/138‑1 (MQ=255)
gTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGTCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGa > 2:17755/1‑138 (MQ=255)
tGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAAc < 2:195967/138‑1 (MQ=255)
tGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAAc < 2:220195/138‑1 (MQ=255)
gCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAAcgcg < 1:550834/138‑1 (MQ=255)
cAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAAcg > 2:408852/1‑135 (MQ=255)
cAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAAcg < 1:408852/135‑1 (MQ=255)
cGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTa > 2:1511816/1‑138 (MQ=255)
tCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCg < 2:1158106/138‑1 (MQ=255)
aCCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGtt < 1:47780/138‑1 (MQ=255)
aCCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGtt > 1:464991/1‑138 (MQ=255)
aCCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGtt < 1:666332/138‑1 (MQ=255)
aCCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTCAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGtt < 2:1629871/138‑1 (MQ=255)
cccATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGttt > 1:203857/1‑138 (MQ=255)
cATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGc > 2:788358/1‑138 (MQ=255)
cATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGc > 2:1041275/1‑138 (MQ=255)
cATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGc > 1:764249/1‑138 (MQ=255)
cATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGCAACCGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGc > 2:264053/1‑138 (MQ=255)
gAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCAt > 2:1460678/1‑138 (MQ=255)
gAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCAt > 1:1510223/1‑138 (MQ=255)
gAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCAt > 1:822721/1‑138 (MQ=255)
gAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCAt > 2:340899/1‑138 (MQ=255)
aaaaGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTa > 1:326822/1‑138 (MQ=255)
aaaGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTAt > 1:267924/1‑138 (MQ=255)
aaaGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTAt < 2:267924/138‑1 (MQ=255)
aaGACAACATCATGTCGGTGTTTGCCTCCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATc < 2:139978/138‑1 (MQ=255)
aaGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATc < 2:280024/138‑1 (MQ=255)
aaGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATc < 1:719095/138‑1 (MQ=255)
aGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCg < 1:1007421/138‑1 (MQ=255)
aGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCg < 2:354335/138‑1 (MQ=255)
acaacaTCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAg < 2:951667/138‑1 (MQ=255)
aacaTCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCg < 1:340899/138‑1 (MQ=255)
acaTCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGt > 2:140452/1‑138 (MQ=255)
catcatGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTg < 2:464991/138‑1 (MQ=255)
tCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGaa > 2:5030/1‑138 (MQ=255)
tttGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGtt > 2:590915/1‑138 (MQ=255)
tttGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGtt > 2:832160/1‑138 (MQ=255)
tttGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGtt > 2:1376959/1‑138 (MQ=255)
ttGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGttt < 1:195472/138‑1 (MQ=255)
tGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTa > 2:476738/1‑138 (MQ=255)
tGCCACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTa < 2:655289/138‑1 (MQ=255)
tGCCACCGTTGGTTCTGGCCCTGGG‑GGGCAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGGTTGCCATTATCGAGCGTGCAACGAAGGCGTTTa > 2:196528/1‑138 (MQ=255)
ccACCGTTGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAAc < 1:1455661/138‑1 (MQ=255)
tGGTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTa < 1:61573/138‑1 (MQ=255)
ggTTCTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGTGCGTGCAACGAAGGCGTTTGACCAAATTaa > 2:1130329/1‑138 (MQ=255)
cTGGCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAaagaa < 1:1059591/138‑1 (MQ=255)
ggCCCTGGG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGc < 1:590915/138‑1 (MQ=255)
|
TTACTACCTCGGTACAGTTGCCCAGCGGTTCAACGCAACAACAGACCCTGAAAGTCGTTGAGCAAATCGAGAAATACTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCT‑GG‑GGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGC > NC_000913/2589306‑2589573
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
