Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 120 93.5 3664254 88.3% 3235536 136.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,855,738 T→C G467G (GGT→GGC)  fhlA → DNA‑binding transcriptional activator FhlA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,855,7380TC98.9% 323.1 / ‑4.6 88G467G (GGT→GGC) fhlADNA‑binding transcriptional activator FhlA
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (46/41);  total (46/42)
Fisher's exact test for biased strand distribution p-value = 4.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01

ATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGTCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGGCAGCAACAAAATCATTC  >  NC_000913/2855608‑2855871
                                                                                                                                  |                                                                                                                                     
aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTg                                                                                                                                <  1:1627894/138‑1 (MQ=255)
 tctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGa                                                                                                                               <  1:519907/138‑1 (MQ=255)
   tcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAAc                                                                                                                             >  1:1752204/1‑138 (MQ=255)
      gTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTgg                                                                                                                          >  2:1034225/1‑138 (MQ=255)
      gTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTgg                                                                                                                          >  1:1604545/1‑138 (MQ=255)
      gTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTgg                                                                                                                          >  2:317720/1‑138 (MQ=255)
      gTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTgg                                                                                                                          >  1:1258296/1‑138 (MQ=255)
       tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGa                                                                                                                               <  2:1590790/132‑1 (MQ=255)
       tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGa                                                                                                                               >  1:1590790/1‑132 (MQ=255)
       tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGc                                                                                                                         >  2:1229994/1‑138 (MQ=255)
       tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGc                                                                                                                         >  1:1021166/1‑138 (MQ=255)
        gggCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCg                                                                                                                        >  2:1075334/1‑138 (MQ=255)
        gggCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCg                                                                                                                        >  1:107179/1‑138 (MQ=255)
           cGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGAt                                                                                                                     >  1:41661/1‑138 (MQ=255)
              aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATaaa                                                                                                                  <  1:55354/138‑1 (MQ=255)
                  atCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCt                                                                                                              <  1:150199/138‑1 (MQ=255)
                  atCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCt                                                                                                              <  1:428989/138‑1 (MQ=255)
                   tCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTc                                                                                                             <  1:351739/138‑1 (MQ=255)
                    cgccgcATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTcc                                                                                                            <  2:724681/138‑1 (MQ=255)
                       cgcATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTg                                                                                                         >  2:1242815/1‑138 (MQ=255)
                       cgcATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTg                                                                                                         <  1:1034225/138‑1 (MQ=255)
                       cgcATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTg                                                                                                         >  1:1598070/1‑138 (MQ=255)
                           tGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTcc                                                                                                     >  2:749891/1‑138 (MQ=255)
                            ggTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATaaa                                                                                                                  >  1:83963/1‑124 (MQ=255)
                            ggTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATaaa                                                                                                                  <  2:83963/124‑1 (MQ=255)
                            ggTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTTCCTGTTCCt                                                                                                    <  1:1229994/138‑1 (MQ=255)
                              tCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTcg                                                                                                  <  2:41661/138‑1 (MQ=255)
                               cAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTcga                                                                                                 <  2:233639/138‑1 (MQ=255)
                               cAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTcga                                                                                                 <  2:1752204/138‑1 (MQ=255)
                                       aCTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTgg                                                                                         >  1:186495/1‑138 (MQ=255)
                                         tGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGc                                                                                       >  2:760200/1‑138 (MQ=255)
                                         tGCGCGGCGATCCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGc                                                                                       >  1:352214/1‑138 (MQ=255)
                                          gcgcGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGt                                                                                                        <  1:739758/120‑1 (MQ=255)
                                          gcgcGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGt                                                                                                        >  2:739758/1‑120 (MQ=255)
                                           cgcgGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGTCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGa                                                                                     <  2:483964/138‑1 (MQ=255)
                                           cgcgGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGa                                                                                     <  2:618871/138‑1 (MQ=255)
                                           cgcgGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGa                                                                                     <  2:1258296/138‑1 (MQ=255)
                                            gcggcgATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGat                                                                                    <  2:111551/138‑1 (MQ=255)
                                              ggcgATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGatat                                                                                  <  2:701666/138‑1 (MQ=255)
                                              ggcgATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGatat                                                                                  <  2:803729/138‑1 (MQ=255)
                                                  aTGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCa                                                                              >  1:413379/1‑138 (MQ=255)
                                                  aTGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCa                                                                              >  1:1204415/1‑138 (MQ=255)
                                                  aTGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCa                                                                              <  1:317720/138‑1 (MQ=255)
                                                  aTGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCa                                                                              >  1:203539/1‑138 (MQ=255)
                                                       tgccGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGa                                                                         >  2:953531/1‑138 (MQ=255)
                                                       tgccGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGa                                                                         >  1:861465/1‑138 (MQ=255)
                                                         ccGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGt                                                                       <  1:1075334/138‑1 (MQ=255)
                                                           ggATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTa                                                                     >  2:1148983/1‑138 (MQ=255)
                                                            gATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTAc                                                                    >  2:1312055/1‑138 (MQ=255)
                                                               tGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGc                                                                 <  2:1598070/138‑1 (MQ=255)
                                                               tGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGc                                                                 <  2:1732279/138‑1 (MQ=255)
                                                                     aaaGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGt                                                           <  2:1522599/138‑1 (MQ=255)
                                                                     aaaGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGt                                                           <  2:413379/138‑1 (MQ=255)
                                                                       aGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTtg                                                         <  1:1242815/138‑1 (MQ=255)
                                                                       aGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTtg                                                         <  1:825550/138‑1 (MQ=255)
                                                                          gATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTtgctg                                                      <  2:1604545/138‑1 (MQ=255)
                                                                             cTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCgt                                                   <  1:679562/138‑1 (MQ=255)
                                                                              tGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCgtg                                                  >  2:1447366/1‑138 (MQ=255)
                                                                                     tCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCa                                           <  1:760200/138‑1 (MQ=255)
                                                                                          aGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGTAc                                      >  1:175811/1‑138 (MQ=255)
                                                                                          aGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAAc                                      >  2:1587261/1‑138 (MQ=255)
                                                                                          aGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAAc                                      >  2:1628065/1‑138 (MQ=255)
                                                                                            cGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGaa                                       >  1:1184274/1‑135 (MQ=255)
                                                                                            cGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGaa                                       <  2:1184274/135‑1 (MQ=255)
                                                                                            cGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAAc                                      >  1:1209328/1‑136 (MQ=255)
                                                                                            cGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAAc                                      <  2:1209328/136‑1 (MQ=255)
                                                                                            cGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAg                                    >  1:68222/1‑138 (MQ=255)
                                                                                            cGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAg                                    >  1:530603/1‑138 (MQ=255)
                                                                                                   cTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGa                                        <  1:833298/127‑1 (MQ=255)
                                                                                                   cTTTTACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGa                                        >  2:833298/1‑127 (MQ=255)
                                                                                                     tttACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGa                                        <  2:1388197/125‑1 (MQ=255)
                                                                                                     tttACCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGa                                        >  1:1388197/1‑125 (MQ=255)
                                                                                                        aCCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGaa                                       <  2:275800/123‑1 (MQ=255)
                                                                                                        aCCGGTGCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGaa                                       >  1:275800/1‑123 (MQ=255)
                                                                                                              gCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAAc                                      <  1:555808/118‑1 (MQ=255)
                                                                                                              gCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAAc                                      >  2:555808/1‑118 (MQ=255)
                                                                                                              gCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGgc                  >  1:1416562/1‑138 (MQ=255)
                                                                                                              gCCAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGgc                  >  1:462166/1‑138 (MQ=255)
                                                                                                                cAGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGgcag                >  1:1508226/1‑138 (MQ=255)
                                                                                                                 aGCGCCCAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGgcagc               >  1:60062/1‑138 (MQ=255)
                                                                                                                      ccAGCGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGGCAGcaacaa          <  1:824891/138‑1 (MQ=255)
                                                                                                                          cGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCTGCAGCAACAAAATc      >  1:92210/1‑138 (MQ=255)
                                                                                                                          cGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGgcagc               <  2:241412/129‑1 (MQ=255)
                                                                                                                          cGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGGCAGCAACAAAATc      >  2:983496/1‑138 (MQ=255)
                                                                                                                          cGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGGCAGCAACAAAATc      <  2:203539/138‑1 (MQ=255)
                                                                                                                          cGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGGCAGCAACAAAATc      >  2:1566001/1‑138 (MQ=255)
                                                                                                                          cGTATCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGGGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGgcagc               >  1:241412/1‑129 (MQ=255)
                                                                                                                              tCGGCCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGGCAGCAACAAAATCATTc  <  2:186495/138‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                     
ATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGTGCCAGCGCCCAGCGTATCGGTCGTTTTGAACTGGCGGATAAAAGCTCCCTGTTCCTCGACGAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGGCAGCAACAAAATCATTC  >  NC_000913/2855608‑2855871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A