Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,687,170	C→T	R403Q (CGG→CAG)	fumA ←	fumarase A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,687,170	0	C	T	100.0%	278.0 / NA	77	R403Q (CGG→CAG)	fumA	fumarase A
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (38/39); total (38/39)

AATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCCGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCAACGCGCA  >  NC_000913/1687042‑1687302

aaTCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGt                                                                                                                           <  1:1189309/140‑1 (MQ=255)

    catccGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTgg                                                                                                                       >  2:46287/1‑140 (MQ=255)

    catccGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTgg                                                                                                                       >  2:564128/1‑140 (MQ=255)

     atccGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGc                                                                                                                      <  2:14846/140‑1 (MQ=255)

       ccgtccgGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGt                                                                                                                    <  1:1340479/140‑1 (MQ=255)

       ccgtccgGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGACGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGt                                                                                                                    >  2:1400907/1‑140 (MQ=255)

          tccgGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCGGTTTGGCGTGAg                                                                                                                 >  2:1361211/1‑140 (MQ=255)

           ccgGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGc                                                                                                                <  1:401713/140‑1 (MQ=255)

            cggcggTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCa                                                                                                               <  2:1241386/140‑1 (MQ=255)

                  tCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCa                                                                                                         <  2:425586/140‑1 (MQ=255)

                   cGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCAc                                                                                                        >  2:917922/1‑140 (MQ=255)

                    gTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCAcg                                                                                                       >  2:911539/1‑140 (MQ=255)

                     ttGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCAcga                                                                                                      <  1:1338599/140‑1 (MQ=255)

                     ttGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCAcga                                                                                                      <  1:678950/140‑1 (MQ=255)

                     ttGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCAcga                                                                                                      <  1:46287/140‑1 (MQ=255)

                     ttGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCAcga                                                                                                      <  1:372931/140‑1 (MQ=255)

                      tGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCAcgac                                                                                                     >  1:1155182/1‑140 (MQ=255)

                       gggCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCAcgacc                                                                                                    <  1:192764/140‑1 (MQ=255)

                         gCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCAcgaccga                                                                                                  >  1:1147427/1‑140 (MQ=255)

                                  aCCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCg                                                                                         <  2:1129185/140‑1 (MQ=255)

                                    cGGAGGCATAACCTTCCGGCGTTTTGGCTGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTg                                                                                       >  2:1248256/1‑140 (MQ=255)

                                        ggCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGt                                                                                   <  1:258494/140‑1 (MQ=255)

                                        ggCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGt                                                                                   <  2:706950/140‑1 (MQ=255)

                                        ggCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGt                                                                                   <  1:1389034/140‑1 (MQ=255)

                                        ggCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGCGAGCAATATCACGACCGACGATAATCGTGCCGt                                                                                   <  2:199921/140‑1 (MQ=255)

                                         gCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGtt                                                                                  >  2:1322840/1‑140 (MQ=255)

                                         gCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGtt                                                                                  >  2:1389305/1‑140 (MQ=255)

                                          cATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTa                                                                                 <  2:532655/140‑1 (MQ=255)

                                           aTAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTaa                                                                                >  1:1325474/1‑140 (MQ=255)

                                             aaCCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGc                                                                              >  2:763645/1‑140 (MQ=255)

                                               ccTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGa                                                                            <  1:70543/140‑1 (MQ=255)

                                                cTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCTGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGAt                                                                           <  2:1236799/140‑1 (MQ=255)

                                                cTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGAt                                                                           <  1:564128/140‑1 (MQ=255)

                                                  tCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATaa                                                                         <  1:506835/140‑1 (MQ=255)

                                                   ccGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAg                                                                        >  1:834595/1‑140 (MQ=255)

                                                   ccGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAg                                                                        >  1:784408/1‑140 (MQ=255)

                                                        gTTTTGGCTGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCgtgt                                                                   <  1:1248256/140‑1 (MQ=255)

                                                          tttGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAg                                                                 <  2:293201/140‑1 (MQ=255)

                                                                 ggACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACggg                                                          <  1:1389305/140‑1 (MQ=255)

                                                                   aCCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGAt                                                        <  1:917922/140‑1 (MQ=255)

                                                                   aCCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGAt                                                        <  2:510251/140‑1 (MQ=255)

                                                                          tagtaAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGa                                                 <  2:1325474/140‑1 (MQ=255)

                                                                           agtaAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGAc                                                <  1:1400907/140‑1 (MQ=255)

                                                                            gtaAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGa                                                 >  2:794649/1‑138 (MQ=255)

                                                                            gtaAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGa                                                 <  1:794649/138‑1 (MQ=255)

                                                                             taAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCGGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACaa                                              <  1:1361211/140‑1 (MQ=255)

                                                                             taAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACaa                                              <  2:1155182/140‑1 (MQ=255)

                                                                              aaaTCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTAAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAAc                                             >  2:74442/1‑140 (MQ=255)

                                                                                   ggATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGc                                        >  2:632123/1‑140 (MQ=255)

                                                                                     atgatCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGa                                      >  2:1182155/1‑140 (MQ=255)

                                                                                       gatCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAgg                                    <  2:834595/140‑1 (MQ=255)

                                                                                        atCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGa                                   <  1:1322840/140‑1 (MQ=255)

                                                                                              gATGTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCtt                             >  2:537253/1‑140 (MQ=255)

                                                                                                 gTACTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCa                          >  1:667623/1‑140 (MQ=255)

                                                                                                   aCTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATc                        >  1:1089501/1‑140 (MQ=255)

                                                                                                   aCTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATc                        >  2:410635/1‑140 (MQ=255)

                                                                                                    cTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAgg                                    >  2:1305917/1‑127 (MQ=255)

                                                                                                    cTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAgg                                    <  1:1305917/127‑1 (MQ=255)

                                                                                                    cTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCg                       >  1:1140708/1‑140 (MQ=255)

                                                                                                    cTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCg                       >  2:746837/1‑140 (MQ=255)

                                                                                                    cTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCg                       >  2:245604/1‑140 (MQ=255)

                                                                                                    cTGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCg                       <  2:1057478/140‑1 (MQ=255)

                                                                                                     tGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCgg                      >  2:1256939/1‑140 (MQ=255)

                                                                                                     tGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCgg                      >  1:795952/1‑140 (MQ=255)

                                                                                                     tGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCgg                      >  2:462508/1‑140 (MQ=255)

                                                                                                     tGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCgg                      >  2:444436/1‑140 (MQ=255)

                                                                                                     tGCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCgg                      >  1:1201975/1‑140 (MQ=255)

                                                                                                     acgggCAGCCCCTCACCGTTCTGCGTCCGACCTGTCAGTTTGTCGAGCGCAATATCACGACCGAGGATAATCGAGCAGTTAAGCAAGACGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATctg                      >  2:215189/4‑138 (MQ=255)

                                                                                                      gCGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGa                     <  2:667623/140‑1 (MQ=255)

                                                                                                       cGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGAc                    >  1:410151/1‑140 (MQ=255)

                                                                                                       cGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGAc                    >  2:548478/1‑140 (MQ=255)

                                                                                                       cGGCAGCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGAc                    >  2:475941/1‑140 (MQ=255)

                                                                                                            gCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTa               >  1:1411671/1‑140 (MQ=255)

                                                                                                            gCCCTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTa               >  2:279010/1‑140 (MQ=255)

                                                                                                              ccTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAg             <  1:632123/140‑1 (MQ=255)

                                                                                                               cTTCACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAgg            <  1:475941/140‑1 (MQ=255)

                                                                                                                  cACCGTTATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCa         <  2:770681/140‑1 (MQ=255)

                                                                                                                       ttATCCATCTGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCAAcgcg    >  2:1159780/1‑140 (MQ=255)

                                                                                                                         atccatctGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCAACGCGCa  <  2:784408/140‑1 (MQ=255)

AATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGTTATCCATCCGCTCTTTCAGTTTGGCGTGAGCAATATCACGACCGACGATAATCGTGCCGTTAAGCGATAAGCGTGTAGAAACGGGATACTGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCAACGCGCA  >  NC_000913/1687042‑1687302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A